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trim trailing
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suzannejin committed Oct 28, 2024
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Showing 1 changed file with 1 addition and 1 deletion.
2 changes: 1 addition & 1 deletion conf/test_experimental.config
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Expand Up @@ -30,7 +30,7 @@ params {
matrix = 'https://raw.githubusercontent.com/nf-core/test-datasets/modules/data/genomics/mus_musculus/rnaseq_expression/SRP254919.salmon.merged.gene_counts.top1000cov.tsv'
contrasts = 'https://raw.githubusercontent.com/nf-core/test-datasets/modules/data/genomics/mus_musculus/rnaseq_expression/SRP254919.contrasts.csv'
pathway = "propd,propr,cor,propd_grea"

// some pathways are not included in the test, because they don't make sense to test for this dataset
// for example propd_fdr don't give significant results on this dataset, and the permutation will be scaped
// and pcor.bshrink is taking too long for this test (15min), and it should be tested on matrices with n > p, or n close to p. (eg. specific pathways, or on DE genes only, etc)
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