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Update README.md - add ref to nf-core/rnaseq and Affymetrix #149

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1 change: 1 addition & 0 deletions CHANGELOG.md
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Expand Up @@ -11,6 +11,7 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
- [[#105](https://github.com/nf-core/differentialabundance/pull/105)] - Enabled multiple GMT/GMX files for GSEA ([@WackerO](https://github.com/WackerO), reported by [@grst](https://github.com/grst), review by [@pinin4fjords](https://github.com/pinin4fjords))
- [[#108](https://github.com/nf-core/differentialabundance/issues/108)] - Add shiny app generation (starting feature set) ([@pinin4fjords](https://github.com/pinin4fjords), review by [@WackerO](https://github.com/WackerO))
- [[#110](https://github.com/nf-core/differentialabundance/pull/110)] - Add shiny app outputs to tower.yml ([@pinin4fjords](https://github.com/pinin4fjords), review by [@WackerO](https://github.com/WackerO), [@maxulysse](https://github.com/maxulysse))
- [[#149]](https://github.com/nf-core/differentialabundance/pull/149) - Update README.md - add ref to nf-core/rnaseq and Affymetrix ([@smoe](https://github.com/smoe), review by [@pinin4fjords](https://github.com/pinin4fjords))

### `Fixed`

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2 changes: 1 addition & 1 deletion README.md
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Expand Up @@ -12,7 +12,7 @@

## Introduction

**nf-core/differentialabundance** is a bioinformatics pipeline that can be used to analyse data represented as matrices, comparing groups of observations to generate differential statistics and downstream analyses. The initial feature set is built around RNA-seq, but we anticipate rapid expansion to include other platforms.
**nf-core/differentialabundance** is a bioinformatics pipeline that can be used to analyse data represented as matrices, comparing groups of observations to generate differential statistics and downstream analyses. The pipeline supports RNA-seq data such as that generated by the nf-core [rnaseq workflow](https://github.com/nf-core/rnaseq), and Affymetrix arrays via .CEL files. Other types of matrix may also work with appropriate changes to parameters, and PRs to support additional specific modalities are welcomed.

The pipeline is built using [Nextflow](https://www.nextflow.io), a workflow tool to run tasks across multiple compute infrastructures in a very portable manner. It uses Docker/Singularity containers making installation trivial and results highly reproducible. The [Nextflow DSL2](https://www.nextflow.io/docs/latest/dsl2.html) implementation of this pipeline uses one container per process which makes it much easier to maintain and update software dependencies. Where possible, these processes have been submitted to and installed from [nf-core/modules](https://github.com/nf-core/modules) in order to make them available to all nf-core pipelines, and to everyone within the Nextflow community!

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