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[dev-ratio] add limma to test_experimental #331

Merged
merged 5 commits into from
Oct 29, 2024
Merged

[dev-ratio] add limma to test_experimental #331

merged 5 commits into from
Oct 29, 2024

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suzannejin
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PR checklist

  • This comment contains a description of changes (with reason).
  • If you've fixed a bug or added code that should be tested, add tests!
  • If you've added a new tool - have you followed the pipeline conventions in the contribution docs
  • If necessary, also make a PR on the nf-core/differentialabundance branch on the nf-core/test-datasets repository.
  • Make sure your code lints (nf-core lint).
  • Ensure the test suite passes (nf-test test main.nf.test -profile test,docker).
  • Check for unexpected warnings in debug mode (nextflow run . -profile debug,test,docker --outdir <OUTDIR>).
  • Usage Documentation in docs/usage.md is updated.
  • Output Documentation in docs/output.md is updated.
  • CHANGELOG.md is updated.
  • README.md is updated (including new tool citations and authors/contributors).

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github-actions bot commented Oct 29, 2024 •
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nf-core pipelines lint overall result: Passed ✅ ⚠️

Posted for pipeline commit f97ba6b

+| ✅ 317 tests passed       |+
#| ❔   7 tests were ignored |#
!| ❗   4 tests had warnings |!

❗ Test warnings:

  • pipeline_todos - TODO string in main.nf: Optionally add in-text citation tools to this list.
  • pipeline_todos - TODO string in main.nf: Optionally add bibliographic entries to this list.
  • pipeline_todos - TODO string in main.nf: Only uncomment below if logic in toolCitationText/toolBibliographyText has been filled!
  • pipeline_todos - TODO string in base.config: Check the defaults for all processes

❔ Tests ignored:

✅ Tests passed:

Run details

  • nf-core/tools version 3.0.2
  • Run at 2024-10-29 11:50:45

@suzannejin suzannejin linked an issue Oct 29, 2024 that may be closed by this pull request
add module LIMMA #310
Closed
1 task
@suzannejin suzannejin marked this pull request as ready for review October 29, 2024 12:02
@suzannejin suzannejin merged commit 1d5b909 into nf-core:dev-ratio Oct 29, 2024
15 checks passed
@suzannejin suzannejin deleted the dev-ratio-limma branch October 29, 2024 12:02
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add module LIMMA
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@suzannejin