nf-core linting

change to epytope 3.3.1 version and new multi container for peptide prediction #682

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Run time

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Job	Run time
nf-core	1m 18s
nf-core	1m 52s
nf-core	1m 33s
EditorConfig	5s
EditorConfig	8s
EditorConfig	9s
PythonBlack	10s
PythonBlack	13s
PythonBlack	12s
Prettier	7s
Prettier	6s
Prettier	6s
	5m 59s