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Remove params.outdir from tests where required and update snapshots #959

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Remove params.outdir from tests where required and update snapshots

Remove params.outdir from tests where required and update snapshots #959

Run time

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Job Run time
Check for changes
7s
ASPERA_CLI docker NF-latest-everything
1m 56s
PIPELINE_INITIALISATION docker NF-latest-everything
45s
UNTAR docker NF-latest-everything
1m 35s
SRA docker NF-latest-everything
4m 3s
SRA_IDS_TO_RUNINFO docker NF-latest-everything
4m 48s
SRA_RUNINFO_TO_FTP docker NF-latest-everything
3m 34s
CUSTOM_SRATOOLSNCBISETTINGS docker NF-latest-everything
1m 22s
PIPELINE_COMPLETION docker NF-latest-everything
50s
UTILS_NFCORE_PIPELINE docker NF-latest-everything
1m 25s
UTILS_NEXTFLOW_PIPELINE docker NF-latest-everything
2m 16s
MULTIQC_MAPPINGS_CONFIG docker NF-latest-everything
4m 17s
FASTQ_DOWNLOAD_PREFETCH_FASTERQDUMP_SRATOOLS docker NF-latest-everything
1m 39s
SRATOOLS_FASTERQDUMP docker NF-latest-everything
2m 14s
SRA_TO_SAMPLESHEET docker NF-latest-everything
3m 51s
SRA_FASTQ_FTP docker NF-latest-everything
2m 29s
SRATOOLS_PREFETCH docker NF-latest-everything
1m 48s
ASPERA_CLI docker NF-23.04
1m 47s
PIPELINE_INITIALISATION docker NF-23.04
22s
UNTAR docker NF-23.04
1m 36s
SRA docker NF-23.04
3m 8s
SRA_IDS_TO_RUNINFO docker NF-23.04
3m 9s
SRA_RUNINFO_TO_FTP docker NF-23.04
3m 59s
CUSTOM_SRATOOLSNCBISETTINGS docker NF-23.04
1m 45s
PIPELINE_COMPLETION docker NF-23.04
44s
UTILS_NFCORE_PIPELINE docker NF-23.04
1m 8s
UTILS_NEXTFLOW_PIPELINE docker NF-23.04
1m 52s
MULTIQC_MAPPINGS_CONFIG docker NF-23.04
3m 29s
FASTQ_DOWNLOAD_PREFETCH_FASTERQDUMP_SRATOOLS docker NF-23.04
1m 43s
SRATOOLS_FASTERQDUMP docker NF-23.04
2m 1s
SRA_TO_SAMPLESHEET docker NF-23.04
3m 2s
SRA_FASTQ_FTP docker NF-23.04
2m 6s
SRATOOLS_PREFETCH docker NF-23.04
1m 17s
confirm-pass
1s
1h 12m 8s