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export CONDA_PREFIX into container when using Singularity and Apptainer #969

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export CONDA_PREFIX into container when using Singularity and Apptainer

export CONDA_PREFIX into container when using Singularity and Apptainer #969

Run time

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Job Run time
Check for changes
6s
Check for changes
6s
PIPELINE_COMPLETION docker NF-latest-everything
56s
PIPELINE_COMPLETION docker NF-latest-everything
56s
PIPELINE_INITIALISATION docker NF-latest-everything
24s
PIPELINE_INITIALISATION docker NF-latest-everything
24s
CUSTOM_SRATOOLSNCBISETTINGS docker NF-latest-everything
1m 3s
CUSTOM_SRATOOLSNCBISETTINGS docker NF-latest-everything
1m 3s
UTILS_NFCORE_PIPELINE docker NF-latest-everything
59s
UTILS_NFCORE_PIPELINE docker NF-latest-everything
59s
SRATOOLS_FASTERQDUMP docker NF-latest-everything
1m 48s
SRATOOLS_FASTERQDUMP docker NF-latest-everything
1m 48s
SRA docker NF-latest-everything
3m 23s
SRA docker NF-latest-everything
3m 23s
SRATOOLS_PREFETCH docker NF-latest-everything
21s
SRATOOLS_PREFETCH docker NF-latest-everything
1m 26s
MULTIQC_MAPPINGS_CONFIG docker NF-latest-everything
3m 14s
MULTIQC_MAPPINGS_CONFIG docker NF-latest-everything
3m 14s
UTILS_NEXTFLOW_PIPELINE docker NF-latest-everything
1m 5s
UTILS_NEXTFLOW_PIPELINE docker NF-latest-everything
1m 5s
PIPELINE docker NF-latest-everything
12m 0s
PIPELINE docker NF-latest-everything
12m 0s
SRA_RUNINFO_TO_FTP docker NF-latest-everything
3m 19s
SRA_RUNINFO_TO_FTP docker NF-latest-everything
3m 19s
ASPERA_CLI docker NF-latest-everything
1m 27s
ASPERA_CLI docker NF-latest-everything
1m 27s
FASTQ_DOWNLOAD_PREFETCH_FASTERQDUMP_SRATOOLS docker NF-latest-everything
1m 30s
FASTQ_DOWNLOAD_PREFETCH_FASTERQDUMP_SRATOOLS docker NF-latest-everything
1m 30s
SRA_FASTQ_FTP docker NF-latest-everything
2m 8s
SRA_FASTQ_FTP docker NF-latest-everything
2m 8s
UNTAR docker NF-latest-everything
1m 32s
UNTAR docker NF-latest-everything
1m 32s
UTILS_NFVALIDATION_PLUGIN docker NF-latest-everything
48s
UTILS_NFVALIDATION_PLUGIN docker NF-latest-everything
48s
SRA_IDS_TO_RUNINFO docker NF-latest-everything
3m 16s
SRA_IDS_TO_RUNINFO docker NF-latest-everything
3m 16s
SRA_TO_SAMPLESHEET docker NF-latest-everything
3m 7s
SRA_TO_SAMPLESHEET docker NF-latest-everything
3m 7s
PIPELINE_COMPLETION docker NF-23.04
24s
PIPELINE_COMPLETION docker NF-23.04
24s
PIPELINE_INITIALISATION docker NF-23.04
26s
PIPELINE_INITIALISATION docker NF-23.04
26s
CUSTOM_SRATOOLSNCBISETTINGS docker NF-23.04
1m 12s
CUSTOM_SRATOOLSNCBISETTINGS docker NF-23.04
1m 12s
UTILS_NFCORE_PIPELINE docker NF-23.04
59s
UTILS_NFCORE_PIPELINE docker NF-23.04
59s
SRATOOLS_FASTERQDUMP docker NF-23.04
2m 3s
SRATOOLS_FASTERQDUMP docker NF-23.04
2m 3s
SRA docker NF-23.04
2m 57s
SRA docker NF-23.04
2m 57s
SRATOOLS_PREFETCH docker NF-23.04
1m 38s
SRATOOLS_PREFETCH docker NF-23.04
1m 38s
MULTIQC_MAPPINGS_CONFIG docker NF-23.04
3m 15s
MULTIQC_MAPPINGS_CONFIG docker NF-23.04
3m 15s
UTILS_NEXTFLOW_PIPELINE docker NF-23.04
1m 0s
UTILS_NEXTFLOW_PIPELINE docker NF-23.04
1m 0s
PIPELINE docker NF-23.04
14m 15s
PIPELINE docker NF-23.04
14m 15s
SRA_RUNINFO_TO_FTP docker NF-23.04
3m 31s
SRA_RUNINFO_TO_FTP docker NF-23.04
3m 31s
ASPERA_CLI docker NF-23.04
1m 8s
ASPERA_CLI docker NF-23.04
1m 8s
FASTQ_DOWNLOAD_PREFETCH_FASTERQDUMP_SRATOOLS docker NF-23.04
1m 20s
FASTQ_DOWNLOAD_PREFETCH_FASTERQDUMP_SRATOOLS docker NF-23.04
1m 20s
SRA_FASTQ_FTP docker NF-23.04
2m 25s
SRA_FASTQ_FTP docker NF-23.04
2m 25s
UNTAR docker NF-23.04
1m 48s
UNTAR docker NF-23.04
1m 48s
UTILS_NFVALIDATION_PLUGIN docker NF-23.04
53s
UTILS_NFVALIDATION_PLUGIN docker NF-23.04
53s
SRA_IDS_TO_RUNINFO docker NF-23.04
3m 17s
SRA_IDS_TO_RUNINFO docker NF-23.04
3m 17s
SRA_TO_SAMPLESHEET docker NF-23.04
3m 33s
SRA_TO_SAMPLESHEET docker NF-23.04
3m 33s
confirm-pass
1s
confirm-pass
1s
2h 58m 7s