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I've created a branch https://github.com/nf-core/fetchngs/tree/skip-runinfo where one can skip the first step. So instead of providing a list of IDs for which metadata is fetched, provide the metadata directly as input and skip that step. It works but was just a quick hack. If this is a generally desirable feature I can code it up in a better way. Maybe using input_type == 'metadata' instead of a new skip_runinfo parameter.
The text was updated successfully, but these errors were encountered:
Description of feature
I've created a branch https://github.com/nf-core/fetchngs/tree/skip-runinfo where one can skip the first step. So instead of providing a list of IDs for which metadata is fetched, provide the metadata directly as input and skip that step. It works but was just a quick hack. If this is a generally desirable feature I can code it up in a better way. Maybe using
input_type == 'metadata'
instead of a newskip_runinfo
parameter.The text was updated successfully, but these errors were encountered: