Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Refactor how versions are handled in pipeline #252

Merged
merged 20 commits into from
Jan 18, 2024
Merged

Refactor how versions are handled in pipeline #252

merged 20 commits into from
Jan 18, 2024

Commits on Jan 17, 2024

  1. Refactor how versions are handled in pipeline

    @drpatelh
    drpatelh committed Jan 17, 2024
    Configuration menu
    Copy the full SHA
    dfa87b9 View commit details
    Browse the repository at this point in the history

  2. Update CHANGELOG

    @drpatelh
    drpatelh committed Jan 17, 2024
    Configuration menu
    Copy the full SHA
    775141d View commit details
    Browse the repository at this point in the history

  3. Fix ECLint

    @drpatelh
    drpatelh committed Jan 17, 2024
    Configuration menu
    Copy the full SHA
    790124a View commit details
    Browse the repository at this point in the history

  4. [automated] Fix linting with Prettier

    @nf-core-bot
    nf-core-bot committed Jan 17, 2024
    Configuration menu
    Copy the full SHA
    5114f76 View commit details
    Browse the repository at this point in the history

  5. Update subworkflows/nf-core/utils_nfcore_pipeline/main.nf 

    Co-authored-by: Robert Syme <[email protected]>
    @drpatelh @robsyme
    drpatelh and robsyme authored Jan 17, 2024
    Configuration menu
    Copy the full SHA
    ca88a5e View commit details
    Browse the repository at this point in the history

  6. Sort includes alphabetically

    @drpatelh
    drpatelh committed Jan 17, 2024
    Configuration menu
    Copy the full SHA
    9cee747 View commit details
    Browse the repository at this point in the history

  7. Merge branch 'fixes' of https://github.com/drpatelh/nf-core-fetchngs … 

    …into fixes
    @drpatelh
    drpatelh committed Jan 17, 2024
    Configuration menu
    Copy the full SHA
    be20070 View commit details
    Browse the repository at this point in the history

  8. Simplify test for utils_nfcore_pipeline

    @drpatelh
    drpatelh committed Jan 17, 2024
    Configuration menu
    Copy the full SHA
    66cb0ba View commit details
    Browse the repository at this point in the history

  9. Refactor how getWorkflowVersion function is called within pipeline

    @drpatelh
    drpatelh committed Jan 17, 2024
    Configuration menu
    Copy the full SHA
    7e79d04 View commit details
    Browse the repository at this point in the history

  10. Remove emit of summary_params from utils_nfvalidation_plugin subworkflow

    @drpatelh
    drpatelh committed Jan 17, 2024
    Configuration menu
    Copy the full SHA
    57efad7 View commit details
    Browse the repository at this point in the history

  11. Use nf-validation plugin to validate and read in samplesheet

    @drpatelh
    drpatelh committed Jan 17, 2024
    Configuration menu
    Copy the full SHA
    d2fac84 View commit details
    Browse the repository at this point in the history

  12. Revert nf-validation plugin to validate and read in samplesheet

    @drpatelh
    drpatelh committed Jan 17, 2024
    Configuration menu
    Copy the full SHA
    a3c627c View commit details
    Browse the repository at this point in the history

  13. Sync email function with nf-core pipeline template

    @drpatelh
    drpatelh committed Jan 17, 2024
    Configuration menu
    Copy the full SHA
    73a831b View commit details
    Browse the repository at this point in the history

  14. Sync dumpParametersToJSON function with nf-core pipeline template

    @drpatelh
    drpatelh committed Jan 17, 2024
    Configuration menu
    Copy the full SHA
    65efde1 View commit details
    Browse the repository at this point in the history

  15. Fix tests for utils_nfcore_pipeline subworkflow

    @drpatelh
    drpatelh committed Jan 17, 2024
    Configuration menu
    Copy the full SHA
    f7be8ce View commit details
    Browse the repository at this point in the history

  16. Fix tests for pipeline

    @drpatelh
    drpatelh committed Jan 17, 2024
    Configuration menu
    Copy the full SHA
    d58cef7 View commit details
    Browse the repository at this point in the history

  17. Fix tests for utils_nextflow_pipeline subworkflow

    @drpatelh
    drpatelh committed Jan 17, 2024
    Configuration menu
    Copy the full SHA
    90973f4 View commit details
    Browse the repository at this point in the history

  18. Fix nf-core lint

    @drpatelh
    drpatelh committed Jan 17, 2024
    Configuration menu
    Copy the full SHA
    6bae551 View commit details
    Browse the repository at this point in the history

  19. Fix Prettier

    @drpatelh
    drpatelh committed Jan 17, 2024
    Configuration menu
    Copy the full SHA
    b74cbbb View commit details
    Browse the repository at this point in the history

Commits on Jan 18, 2024

  1. Move params to take block in utils_nfcore_fetchngs_pipeline subworkflow

    @drpatelh
    drpatelh committed Jan 18, 2024
    Configuration menu
    Copy the full SHA
    e3d81da View commit details
    Browse the repository at this point in the history