Important! Template update for nf-core/tools v3.0.2 #1032
GitHub Actions / JUnit Test Report
failed
Oct 14, 2024 in 0s
2 tests run, 0 passed, 0 skipped, 2 failed.
Annotations
Check failure on line 1 in Test Process SRATOOLS_PREFETCH
github-actions / JUnit Test Report
Test Process SRATOOLS_PREFETCH.sratools/prefetch
Assertion failed:
2 of 2 assertions failed
Raw output
Nextflow stdout:
N E X T F L O W ~ version 24.09.1-edge
Launching `/home/runner/work/fetchngs/fetchngs/.nf-test-b621a3ed5c9be6ac30fd8189720042bb.nf` [serene_banach] DSL2 - revision: 499771e3f1
Downloading plugin [email protected]
WARN: Access to undefined parameter `modules_testdata_base_path` -- Initialise it to a default value eg. `params.modules_testdata_base_path = some_value`
ERROR ~ No such file or directory: /home/runner/work/fetchngs/fetchngs/.nf-test/tests/b621a3ed5c9be6ac30fd8189720042bb/nullgeneric/config/ncbi_user_settings.mkfg
-- Check script '/home/runner/work/fetchngs/fetchngs/.nf-test-b621a3ed5c9be6ac30fd8189720042bb.nf' at line: 33 or see '/home/runner/work/fetchngs/fetchngs/.nf-test/tests/b621a3ed5c9be6ac30fd8189720042bb/meta/nextflow.log' file for more details
Nextflow stderr:
Check failure on line 1 in Test Process SRATOOLS_PREFETCH
github-actions / JUnit Test Report
Test Process SRATOOLS_PREFETCH.sratools/prefetch with sralite
Assertion failed:
2 of 2 assertions failed
Raw output
Nextflow stdout:
N E X T F L O W ~ version 24.09.1-edge
Launching `/home/runner/work/fetchngs/fetchngs/.nf-test-f40b61cd66fe3a90888ec5cdd9beea03.nf` [stoic_colden] DSL2 - revision: 8ae9845019
WARN: Access to undefined parameter `modules_testdata_base_path` -- Initialise it to a default value eg. `params.modules_testdata_base_path = some_value`
ERROR ~ No such file or directory: /home/runner/work/fetchngs/fetchngs/.nf-test/tests/f40b61cd66fe3a90888ec5cdd9beea03/nullgeneric/config/ncbi_user_settings.mkfg
-- Check script '/home/runner/work/fetchngs/fetchngs/.nf-test-f40b61cd66fe3a90888ec5cdd9beea03.nf' at line: 33 or see '/home/runner/work/fetchngs/fetchngs/.nf-test/tests/f40b61cd66fe3a90888ec5cdd9beea03/meta/nextflow.log' file for more details
Nextflow stderr:
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