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Adding pipeline nf-tests to nf-core/mag #1511

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Adding pipeline nf-tests to nf-core/mag

Adding pipeline nf-tests to nf-core/mag #1511

Re-run triggered February 14, 2024 20:30
@CarsonJMCarsonJM
#550
CarsonJM:pipeline-nf-tests
Status Success
Total duration 16m 10s
Artifacts –

ci.yml

on: pull_request
Check for changes
4s
Check for changes
Choose nextflow versions to test against depending on target branch
0s
Choose nextflow versions to test against depending on target branch
Matrix: test
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12 errors and 25 warnings
mag_test_bbnorm docker NF latest-everything
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
mag_test_adapterremoval docker NF latest-everything
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
mag_test_binrefinement docker NF latest-everything
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
mag_test_host_rm docker NF latest-everything
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
mag_test_hybrid docker NF latest-everything
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
mag_test_busco_auto docker NF latest-everything
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
mag_test_hybrid_host_rm docker NF latest-everything
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
mag_test_nothing docker NF latest-everything
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
mag_test docker NF latest-everything
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
cat/cat docker NF latest-everything
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
mag_test_virus_identification docker NF latest-everything
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
mag_test_ancient_dna docker NF latest-everything
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
Check for changes
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v3, dorny/paths-filter@v2. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
mag_test_bbnorm docker NF latest-everything
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/setup-nextflow@v1, actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
mag_test_bbnorm docker NF latest-everything
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
mag_test_adapterremoval docker NF latest-everything
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/setup-nextflow@v1, actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
mag_test_adapterremoval docker NF latest-everything
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
mag_test_binrefinement docker NF latest-everything
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/setup-nextflow@v1, actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
mag_test_binrefinement docker NF latest-everything
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
mag_test_host_rm docker NF latest-everything
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/setup-nextflow@v1, actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
mag_test_host_rm docker NF latest-everything
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
mag_test_hybrid docker NF latest-everything
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/setup-nextflow@v1, actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
mag_test_hybrid docker NF latest-everything
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
mag_test_busco_auto docker NF latest-everything
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/setup-nextflow@v1, actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
mag_test_busco_auto docker NF latest-everything
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
mag_test_hybrid_host_rm docker NF latest-everything
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/setup-nextflow@v1, actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
mag_test_hybrid_host_rm docker NF latest-everything
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
mag_test_nothing docker NF latest-everything
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/setup-nextflow@v1, actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
mag_test_nothing docker NF latest-everything
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
mag_test docker NF latest-everything
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/setup-nextflow@v1, actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
mag_test docker NF latest-everything
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
cat/cat docker NF latest-everything
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/setup-nextflow@v1, actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
cat/cat docker NF latest-everything
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
mag_test_virus_identification docker NF latest-everything
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/setup-nextflow@v1, actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
mag_test_virus_identification docker NF latest-everything
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
mag_test_ancient_dna docker NF latest-everything
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/setup-nextflow@v1, actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
mag_test_ancient_dna docker NF latest-everything
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23