Fix gunc

nf-core · Oct 31, 2024 · da52285 · da52285
1 parent 196c184
commit da52285
Showing 1 changed file with 11 additions and 7 deletions.
diff --git a/subworkflows/local/bin_qc.nf b/subworkflows/local/bin_qc.nf
@@ -132,9 +132,13 @@ workflow BIN_QC {
         /*
          * GUNC
          */
-        ch_input_bins_for_gunc = ch_bins.filter { meta, _bins ->
-            meta.domain != "eukarya"
-        }
+        ch_input_bins_for_gunc = ch_bins
+            .filter { meta, _bins ->
+                meta.domain != "eukarya"
+            }
+            .flatMap { meta, bins ->
+                bins.collect { bin -> [meta, bin] }
+            }
 
         if ( params.gunc_db ) {
             ch_db_for_gunc = ch_gunc_db
@@ -158,10 +162,10 @@ workflow BIN_QC {
             GUNC_MERGECHECKM(ch_input_to_mergecheckm)
             ch_versions.mix(GUNC_MERGECHECKM.out.versions)
 
-        // Make sure to keep directory in sync with modules.conf
-        GUNC_MERGECHECKM.out.tsv
-            .map{it[1]}
-            .collectFile(name: "gunc_checkm_summary.tsv", keepHeader: true, storeDir: "${params.outdir}/GenomeBinning/QC/")
+            // Make sure to keep directory in sync with modules.conf
+            GUNC_MERGECHECKM.out.tsv
+                .map{it[1]}
+                .collectFile(name: "gunc_checkm_summary.tsv", keepHeader: true, storeDir: "${params.outdir}/GenomeBinning/QC/")
         }
     }