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Adding pipeline nf-tests to nf-core/mag #550

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Adding pipeline nf-tests to nf-core/mag #550

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Commits on Sep 26, 2023

  1. Merge pull request nf-core#499 from nf-core/dev 

    Release 2.4
    @jfy133
    jfy133 authored Sep 26, 2023
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Commits on Oct 10, 2023

  1. Merge pull request nf-core#524 from nf-core/dev 

    Release: 2.5.0
    @jfy133
    jfy133 authored Oct 10, 2023
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Commits on Nov 17, 2023

  1. Merge pull request nf-core#541 from nf-core/dev 

    Patch release 2.5.1
    @jfy133
    jfy133 authored Nov 17, 2023
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Commits on Nov 20, 2023

  1. Added ability to auto-create samplesheet for phageannotator

    @CarsonJM
    CarsonJM committed Nov 20, 2023
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  2. Created tests for samplesheet creation

    @CarsonJM
    CarsonJM committed Nov 20, 2023
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  3. Added nf-core-pipeline parameter to schema

    @CarsonJM
    CarsonJM committed Nov 20, 2023
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  4. Changed input to samplesheet creation

    @CarsonJM
    CarsonJM committed Nov 20, 2023
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  5. Conditional running of samplesheet creation

    @CarsonJM
    CarsonJM committed Nov 20, 2023
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Commits on Nov 29, 2023

  1. Updated docs and added pipeline to output file name

    @CarsonJM
    CarsonJM committed Nov 29, 2023
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Commits on Dec 8, 2023

  1. Started structuring mag for nf-tests

    @CarsonJM
    CarsonJM committed Dec 8, 2023
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Commits on Dec 12, 2023

  1. Moving config file params to nf-test files

    @CarsonJM
    CarsonJM committed Dec 12, 2023
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Commits on Dec 13, 2023

  1. virus identification test complete

    @CarsonJM
    CarsonJM committed Dec 13, 2023
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  2. Added test_adapterremoval tests

    @CarsonJM
    CarsonJM committed Dec 13, 2023
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  3. Merge branch 'pipeline-nf-tests' of https://github.com/CarsonJM/mag i… 

    …nto pipeline-nf-tests
    @CarsonJM
    CarsonJM committed Dec 13, 2023
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  4. Merge branch 'nf-core:master' into pipeline-nf-tests

    @CarsonJM
    CarsonJM authored Dec 13, 2023
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  5. Updated CI to run nf-tests

    @CarsonJM
    CarsonJM committed Dec 13, 2023
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  6. Fixed test_nothing nf-test

    @CarsonJM
    CarsonJM committed Dec 13, 2023
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Commits on Dec 14, 2023

  1. Modified names and used collectFile()

    @CarsonJM
    CarsonJM committed Dec 14, 2023
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  2. Restructured workflows dir and added more nf-tests

    @CarsonJM
    CarsonJM committed Dec 14, 2023
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  3. Fixed linting and CI

    @CarsonJM
    CarsonJM committed Dec 14, 2023
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  4. Fixed CI part 2

    @CarsonJM
    CarsonJM committed Dec 14, 2023
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Commits on Dec 15, 2023

  1. Added ancient_dna test and reproducibility for binning

    @CarsonJM
    CarsonJM committed Dec 15, 2023
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Commits on Jan 4, 2024

  1. Added and fixed nf-tests

    @CarsonJM
    CarsonJM committed Jan 4, 2024
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  2. Updated CI tags

    @CarsonJM
    CarsonJM committed Jan 4, 2024
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Commits on Jan 8, 2024

  1. Fixed snapshots and linting

    @CarsonJM
    CarsonJM committed Jan 8, 2024
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  2. Fixed resource requests

    @CarsonJM
    CarsonJM committed Jan 8, 2024
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  3. Fixed linting

    @CarsonJM
    CarsonJM committed Jan 8, 2024
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  4. Updated snapshot

    @CarsonJM
    CarsonJM committed Jan 8, 2024
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Commits on Jan 12, 2024

  1. Remove unused local modules

    @CarsonJM
    CarsonJM committed Jan 12, 2024
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Commits on Jan 17, 2024

  1. Merge branch 'dev' into pipeline-nf-tests

    @CarsonJM
    CarsonJM authored Jan 17, 2024
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  2. Updated nf-core modules and pinned prettier version

    @CarsonJM
    CarsonJM committed Jan 17, 2024
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  3. Added test_data config to CI

    @CarsonJM
    CarsonJM committed Jan 17, 2024
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  4. Fixed tags for nf-core modules

    @CarsonJM
    CarsonJM committed Jan 17, 2024
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  5. Merge branch 'nf-core:dev' into dev

    @CarsonJM
    CarsonJM authored Jan 17, 2024
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  6. Updated snapshots to reflect new nf-core modules

    @CarsonJM
    CarsonJM committed Jan 17, 2024
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  7. Fixed CPU./mem requests

    @CarsonJM
    CarsonJM committed Jan 17, 2024
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  8. Update genomad hash

    @CarsonJM
    CarsonJM committed Jan 17, 2024
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  9. Removed unecessary reproducibility options and updated schema

    @CarsonJM
    CarsonJM committed Jan 17, 2024
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  10. Fixed linting

    @CarsonJM
    CarsonJM committed Jan 17, 2024
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  11. Fixed CI yet again

    @CarsonJM
    CarsonJM committed Jan 17, 2024
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  12. [automated] Fix linting with Prettier

    @nf-core-bot
    nf-core-bot committed Jan 17, 2024
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  13. [automated] Fix linting with Prettier

    @nf-core-bot
    nf-core-bot committed Jan 17, 2024
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Commits on Feb 2, 2024

  1. Merge branch 'dev' of https://github.com/CarsonJM/mag into pipeline-n… 

    …f-tests
    @CarsonJM
    CarsonJM committed Feb 2, 2024
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  2. Merge branch 'nf-core:dev' into dev

    @CarsonJM
    CarsonJM authored Feb 2, 2024
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  3. Merge branch 'dev' of https://github.com/CarsonJM/mag into pipeline-n… 

    …f-tests
    @CarsonJM
    CarsonJM committed Feb 2, 2024
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  4. Updated cat/cat and bin_summary

    @CarsonJM
    CarsonJM committed Feb 2, 2024
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Commits on Feb 5, 2024

  1. Started updating nf-test snapshots

    @CarsonJM
    CarsonJM committed Feb 5, 2024
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Commits on Feb 8, 2024

  1. Merge branch 'dev' of https://github.com/nf-core/mag into pipeline-nf… 

    …-tests
    @CarsonJM
    CarsonJM committed Feb 8, 2024
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  2. Updated several workflow nf-tests after pipeline version update

    @CarsonJM
    CarsonJM committed Feb 8, 2024
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Commits on Feb 9, 2024

  1. Added test.config to CI for mem req

    @CarsonJM
    CarsonJM committed Feb 9, 2024
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Commits on Feb 12, 2024

  1. Updated virus identification test

    @CarsonJM
    CarsonJM committed Feb 12, 2024
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  2. Merge branch 'pipeline-nf-tests' of https://github.com/CarsonJM/mag i… 

    …nto pipeline-nf-tests
    @CarsonJM
    CarsonJM committed Feb 12, 2024
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  3. Merge branch 'dev' of https://github.com/nf-core/mag into pipeline-nf… 

    …-tests
    @CarsonJM
    CarsonJM committed Feb 12, 2024
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  4. Updated test config temporarily to test CI

    @CarsonJM
    CarsonJM committed Feb 12, 2024
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  5. Update virus_identification snap

    @CarsonJM
    CarsonJM committed Feb 12, 2024
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  6. Include test_data for nf-tests

    @CarsonJM
    CarsonJM committed Feb 12, 2024
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  7. Added nf-test config file

    @CarsonJM
    CarsonJM committed Feb 12, 2024
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  8. Fixed path to nf-test config

    @CarsonJM
    CarsonJM committed Feb 12, 2024
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Commits on Feb 14, 2024

  1. Added back config files and restructued nf-test config

    @CarsonJM
    CarsonJM committed Feb 14, 2024
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  2. Added config file to each nf-test file

    @CarsonJM
    CarsonJM committed Feb 14, 2024
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  3. Renamed test configs and included profiles in nf-tests

    @CarsonJM
    CarsonJM committed Feb 14, 2024
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  4. Removed local proxy code

    @CarsonJM
    CarsonJM committed Feb 14, 2024
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