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mag 3.2.0 - Salmon Salmon
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@jfy133 jfy133 released this 27 Oct 15:10
· 9 commits to master since this release
3.2.0
74b5c92
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Added

  • #674 - Added --longread_adaptertrimming_tool Where user can chose between porechop_abi (default) and porechop (added by @muabnezor)

Changed

  • #674 - Changed to porechop-abi as default adapter trimming tool for long reads. User can still use porechop if preferred (added by @muabnezor)
  • #666 - Update SPAdes to version 4.0.0, replace both METASPADES and MEGAHIT with official nf-core modules (requested by @elsherbini, fix by @jfy133)
  • #666 - Update URLs to GTDB database downloads due to server move (reported by @Jokendo-collab, fix by @jfy133)
  • #695 - Updated to nf-core 3.0.2 TEMPLATE (by @jfy133)
  • #695 - Switch more stable Zenodo link for CheckM data (by @jfy133)

Fixed

  • #674 - Make longread preprocessing a subworkflow (added by @muabnezor)
  • #674 - Add porechop and filtlong logs to multiqc (added by @muabnezor)
  • #674 - Change local filtlong module to the official nf-core/filtlong module (added by @muabnezor)
  • #690 - MaxBin2 now using the abundance information from different samples rather than an average (reported by @uel3 and fixed by @d4straub)
  • #698 - Updated prodigal module to not pick up input symlinks for compression causing pigz errors (reported by @zackhenny, fix by @jfy133 )

Dependencies

Tool Previous version New version
Porechop_ABI 0.5.0
Filtlong 0.2.0 0.2.1
SPAdes 3.15.3 4.0.0

Contributors

elsherbini, jfy133, and 5 other contributors
Assets 2
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