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Reinstall bam_stats_samtools to get it back into modules.json
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@erikrikarddaniel
erikrikarddaniel committed Jan 24, 2025
1 parent 3eca6a0 commit cc1ae63
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113 changes: 33 additions & 80 deletions modules.json
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Original file line number Diff line number Diff line change
Expand Up @@ -8,191 +8,144 @@
"bbmap/align": {
"branch": "master",
"git_sha": "49780ab7ba87906103c8810044008a042748fd4f",
"installed_by": [
"modules"
]
"installed_by": ["modules"]
},
"bbmap/bbduk": {
"branch": "master",
"git_sha": "a1abf90966a2a4016d3c3e41e228bfcbd4811ccc",
"installed_by": [
"modules"
]
"installed_by": ["modules"]
},
"bbmap/bbnorm": {
"branch": "master",
"git_sha": "666652151335353eef2fcd58880bcef5bc2928e1",
"installed_by": [
"modules"
]
"installed_by": ["modules"]
},
"bbmap/index": {
"branch": "master",
"git_sha": "49780ab7ba87906103c8810044008a042748fd4f",
"installed_by": [
"modules"
]
"installed_by": ["modules"]
},
"cat/cat": {
"branch": "master",
"git_sha": "666652151335353eef2fcd58880bcef5bc2928e1",
"installed_by": [
"modules"
]
"installed_by": ["modules"]
},
"cat/fastq": {
"branch": "master",
"git_sha": "0e9cb409c32d3ec4f0d3804588e4778971c09b7e",
"installed_by": [
"modules"
]
"installed_by": ["modules"]
},
"fastqc": {
"branch": "master",
"git_sha": "08108058ea36a63f141c25c4e75f9f872a5b2296",
"installed_by": [
"modules"
]
"installed_by": ["modules"]
},
"hmmer/hmmsearch": {
"branch": "master",
"git_sha": "666652151335353eef2fcd58880bcef5bc2928e1",
"installed_by": [
"modules"
]
"installed_by": ["modules"]
},
"multiqc": {
"branch": "master",
"git_sha": "f80914f78fb7fa1c00b14cfeb29575ee12240d9c",
"installed_by": [
"modules"
]
"installed_by": ["modules"]
},
"pigz/compress": {
"branch": "master",
"git_sha": "666652151335353eef2fcd58880bcef5bc2928e1",
"installed_by": [
"modules"
]
"installed_by": ["modules"]
},
"prodigal": {
"branch": "master",
"git_sha": "666652151335353eef2fcd58880bcef5bc2928e1",
"installed_by": [
"modules"
]
"installed_by": ["modules"]
},
"prokka": {
"branch": "master",
"git_sha": "bcfb2f7efd4444ab442ffc8a248afbd62bca5ae7",
"installed_by": [
"modules"
]
"installed_by": ["modules"]
},
"samtools/flagstat": {
"branch": "master",
"git_sha": "2d20463181b1c38981a02e90d3084b5f9fa8d540",
"installed_by": [
"bam_stats_samtools"
]
"installed_by": ["bam_stats_samtools"]
},
"samtools/idxstats": {
"branch": "master",
"git_sha": "2d20463181b1c38981a02e90d3084b5f9fa8d540",
"installed_by": [
"bam_stats_samtools"
]
"installed_by": ["bam_stats_samtools"]
},
"samtools/index": {
"branch": "master",
"git_sha": "f4596fe0bdc096cf53ec4497e83defdb3a94ff62",
"installed_by": [
"bam_sort_stats_samtools"
]
"installed_by": ["bam_sort_stats_samtools"]
},
"samtools/sort": {
"branch": "master",
"git_sha": "4352dbdb09ec40db71e9b172b97a01dcf5622c26",
"installed_by": [
"bam_sort_stats_samtools"
]
"installed_by": ["bam_sort_stats_samtools"]
},
"samtools/stats": {
"branch": "master",
"git_sha": "f4596fe0bdc096cf53ec4497e83defdb3a94ff62",
"installed_by": [
"bam_stats_samtools"
]
"git_sha": "2d20463181b1c38981a02e90d3084b5f9fa8d540",
"installed_by": ["bam_stats_samtools"]
},
"seqtk/mergepe": {
"branch": "master",
"git_sha": "7f88aae93c69586c0789322b77743ee0ef469502",
"installed_by": [
"modules"
]
"installed_by": ["modules"]
},
"seqtk/seq": {
"branch": "master",
"git_sha": "7f88aae93c69586c0789322b77743ee0ef469502",
"installed_by": [
"modules"
]
"installed_by": ["modules"]
},
"spades": {
"branch": "master",
"git_sha": "3f5420aa22e00bd030a2556dfdffc9e164ec0ec5",
"installed_by": [
"modules"
]
"installed_by": ["modules"]
},
"subread/featurecounts": {
"branch": "master",
"git_sha": "e5265c217dcfbff7731c40623aaf07538fdd3e1c",
"installed_by": [
"modules"
]
"installed_by": ["modules"]
},
"taxonkit/lineage": {
"branch": "master",
"git_sha": "3e19c2116c92f21f983fa86e01d01c558473bacb",
"installed_by": [
"modules"
]
"installed_by": ["modules"]
},
"trimgalore": {
"branch": "master",
"git_sha": "a98418419ae6c9df3cf6cf108d1e1aba71037d5a",
"installed_by": [
"modules"
]
"installed_by": ["modules"]
}
}
},
"subworkflows": {
"nf-core": {
"bam_stats_samtools": {
"branch": "master",
"git_sha": "763d4b5c05ffda3ac1ac969dc67f7458cfb2eb1d",
"installed_by": ["subworkflows"]
},
"utils_nextflow_pipeline": {
"branch": "master",
"git_sha": "c2b22d85f30a706a3073387f30380704fcae013b",
"installed_by": [
"subworkflows"
]
"installed_by": ["subworkflows"]
},
"utils_nfcore_pipeline": {
"branch": "master",
"git_sha": "51ae5406a030d4da1e49e4dab49756844fdd6c7a",
"installed_by": [
"subworkflows"
]
"installed_by": ["subworkflows"]
},
"utils_nfschema_plugin": {
"branch": "master",
"git_sha": "2fd2cd6d0e7b273747f32e465fdc6bcc3ae0814e",
"installed_by": [
"subworkflows"
]
"installed_by": ["subworkflows"]
}
}
}
}
}
}
}
8 changes: 4 additions & 4 deletions modules/nf-core/samtools/stats/environment.yml
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5 changes: 2 additions & 3 deletions modules/nf-core/samtools/stats/main.nf
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69 changes: 36 additions & 33 deletions modules/nf-core/samtools/stats/meta.yml
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