Update workflows/metatdenovo.nf

Co-authored-by: Mahesh Binzer-Panchal <[email protected]>
nf-core · Jan 30, 2024 · e59c4fd · e59c4fd
1 parent 75f0338
commit e59c4fd
Showing 1 changed file with 2 additions and 2 deletions.
diff --git a/workflows/metatdenovo.nf b/workflows/metatdenovo.nf
@@ -273,8 +273,8 @@ workflow METATDENOVO {
     } else if ( assembler == 'rnaspades' ) {
         // 1. Write a yaml file for Spades
         WRITESPADESYAML (
-            ch_pe_reads_to_assembly.collect().ifEmpty([]),
-            ch_se_reads_to_assembly.collect().ifEmpty([])
+            ch_pe_reads_to_assembly.toList(),
+            ch_se_reads_to_assembly.toList()
         )
         ch_versions    = ch_versions.mix(WRITESPADESYAML.out.versions)
         // 2. Call the module with a channel with all fastq files plus the yaml