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Change sed regex for version reporting in pigz modules #16541

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Change sed regex for version reporting in pigz modules

Change sed regex for version reporting in pigz modules #16541

Triggered via pull request October 30, 2024 14:01
@ljwharbersljwharbers
synchronize #6878
ljwharbers:master
Status Cancelled
Total duration 3m 22s
Artifacts –

test.yml

on: pull_request
nf-test-changes
29s
nf-test-changes
pytest-changes
5s
pytest-changes
prettier
37s
prettier
editorconfig
10s
editorconfig
pre-commit
41s
pre-commit
Matrix: nf-test
Matrix: nf-core-lint-modules
Matrix: nf-core-lint-modules
Matrix: pytest
confirm-pass
0s
confirm-pass
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21 errors and 3 warnings
editorconfig
Process completed with exit code 1.
prettier
Process completed with exit code 1.
pre-commit
Process completed with exit code 1.
nf-core-lint-modules (tcoffee/irmsd)
Process completed with exit code 1.
nf-test (modules/nf-core/tcoffee/tcs, docker_self_hosted)
Canceling since a higher priority waiting request for 'Run tests-6878' exists
nf-test (modules/nf-core/tcoffee/irmsd, conda)
Canceling since a higher priority waiting request for 'Run tests-6878' exists
nf-test (modules/nf-core/tcoffee/irmsd, singularity)
Canceling since a higher priority waiting request for 'Run tests-6878' exists
nf-test (modules/nf-core/tcoffee/tcs, singularity)
Canceling since a higher priority waiting request for 'Run tests-6878' exists
nf-test (modules/nf-core/tcoffee/irmsd, docker_self_hosted)
Canceling since a higher priority waiting request for 'Run tests-6878' exists
nf-test (modules/nf-core/tcoffee/tcs, conda)
Canceling since a higher priority waiting request for 'Run tests-6878' exists
nf-test (modules/nf-core/pigz/compress, conda)
Canceling since a higher priority waiting request for 'Run tests-6878' exists
nf-test (modules/nf-core/pigz/compress, conda)
The operation was canceled.
nf-test (modules/nf-core/pigz/uncompress, conda)
Canceling since a higher priority waiting request for 'Run tests-6878' exists
nf-test (modules/nf-core/pigz/uncompress, conda)
The operation was canceled.
nf-test (modules/nf-core/pigz/compress, singularity)
Canceling since a higher priority waiting request for 'Run tests-6878' exists
nf-test (modules/nf-core/pigz/compress, singularity)
The operation was canceled.
nf-test (modules/nf-core/pigz/uncompress, docker_self_hosted)
Canceling since a higher priority waiting request for 'Run tests-6878' exists
nf-test (modules/nf-core/pigz/uncompress, docker_self_hosted)
The operation was canceled.
nf-test (modules/nf-core/pigz/uncompress, singularity)
Canceling since a higher priority waiting request for 'Run tests-6878' exists
nf-test (modules/nf-core/pigz/uncompress, singularity)
The operation was canceled.
confirm-pass
Process completed with exit code 1.
pytest-changes
The following actions use a deprecated Node.js version and will be forced to run on node20: mirpedrol/paths-filter@main. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
pre-commit
The `python-version` input is not set. The version of Python currently in `PATH` will be used.
nf-test (modules/nf-core/pigz/compress, conda)
/home/ubuntu/miniconda3/lib/python3.12/site-packages/conda/base/context.py:198: FutureWarning: Adding 'defaults' to channel list implicitly is deprecated and will be removed in 25.3. To remove this warning, please choose a default channel explicitly with conda's regular configuration system, e.g. by adding 'defaults' to the list of channels: conda config --add channels defaults For more information see https://docs.conda.io/projects/conda/en/stable/user-guide/configuration/use-condarc.html deprecated.topic(