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New module: SoupX ambient RNA removal #16578

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New module: SoupX ambient RNA removal

New module: SoupX ambient RNA removal #16578

Triggered via pull request October 30, 2024 21:46
@LeonHafnerLeonHafner
synchronize #6879
LeonHafner:soupx
Status Cancelled
Total duration 2m 4s
Artifacts –

test.yml

on: pull_request
nf-test-changes
1m 1s
nf-test-changes
pytest-changes
5s
pytest-changes
prettier
31s
prettier
editorconfig
11s
editorconfig
pre-commit
44s
pre-commit
Matrix: nf-test
Matrix: nf-core-lint-modules
Matrix: nf-core-lint-modules
Matrix: pytest
confirm-pass
0s
confirm-pass
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26 errors and 2 warnings
nf-test (modules/nf-core/cellbender/removebackground, docker_self_hosted)
Canceling since a higher priority waiting request for 'Run tests-6879' exists
nf-core-lint-modules (svdb/merge)
Canceling since a higher priority waiting request for 'Run tests-6879' exists
nf-core-lint-modules (parabricks/fq2bam)
Canceling since a higher priority waiting request for 'Run tests-6879' exists
nf-core-lint-modules (parabricks/fq2bammeth)
Canceling since a higher priority waiting request for 'Run tests-6879' exists
nf-core-lint-modules (cellbender/removebackground)
Canceling since a higher priority waiting request for 'Run tests-6879' exists
nf-core-lint-modules (soupx)
Canceling since a higher priority waiting request for 'Run tests-6879' exists
nf-core-lint-modules (mcstaging/phenoimager2mc)
Canceling since a higher priority waiting request for 'Run tests-6879' exists
nf-test (modules/nf-core/cellbender/removebackground, singularity)
Canceling since a higher priority waiting request for 'Run tests-6879' exists
nf-test (modules/nf-core/cellbender/removebackground, conda)
Canceling since a higher priority waiting request for 'Run tests-6879' exists
nf-test (modules/nf-core/mcstaging/phenoimager2mc, singularity)
Canceling since a higher priority waiting request for 'Run tests-6879' exists
nf-test (modules/nf-core/soupx, docker_self_hosted)
Canceling since a higher priority waiting request for 'Run tests-6879' exists
nf-test (modules/nf-core/soupx, conda)
Canceling since a higher priority waiting request for 'Run tests-6879' exists
nf-test (modules/nf-core/mcstaging/phenoimager2mc, docker_self_hosted)
Canceling since a higher priority waiting request for 'Run tests-6879' exists
nf-test (modules/nf-core/soupx, singularity)
Canceling since a higher priority waiting request for 'Run tests-6879' exists
nf-test (subworkflows/nf-core/fasta_newick_epang_gappa, docker_self_hosted)
Canceling since a higher priority waiting request for 'Run tests-6879' exists
nf-test (subworkflows/nf-core/fasta_newick_epang_gappa, singularity)
Canceling since a higher priority waiting request for 'Run tests-6879' exists
nf-test (modules/nf-core/svdb/merge, docker_self_hosted)
Canceling since a higher priority waiting request for 'Run tests-6879' exists
nf-test (modules/nf-core/svdb/merge, conda)
Canceling since a higher priority waiting request for 'Run tests-6879' exists
nf-test (subworkflows/nf-core/utils_nextflow_pipeline, docker_self_hosted)
Canceling since a higher priority waiting request for 'Run tests-6879' exists
nf-test (subworkflows/nf-core/utils_nextflow_pipeline, conda)
Canceling since a higher priority waiting request for 'Run tests-6879' exists
nf-test (modules/nf-core/svdb/merge, singularity)
Canceling since a higher priority waiting request for 'Run tests-6879' exists
nf-test (subworkflows/nf-core/utils_nextflow_pipeline, singularity)
Canceling since a higher priority waiting request for 'Run tests-6879' exists
nf-core-lint-modules (fasta_newick_epang_gappa)
Canceling since a higher priority waiting request for 'Run tests-6879' exists
nf-core-lint-modules (fasta_newick_epang_gappa)
The operation was canceled.
nf-core-lint-modules (utils_nextflow_pipeline)
Canceling since a higher priority waiting request for 'Run tests-6879' exists
nf-core-lint-modules (utils_nextflow_pipeline)
The operation was canceled.
pytest-changes
The following actions use a deprecated Node.js version and will be forced to run on node20: mirpedrol/paths-filter@main. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
pre-commit
The `python-version` input is not set. The version of Python currently in `PATH` will be used.