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update bcftools concat #2351

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update bcftools concat

update bcftools concat #2351

Triggered via pull request October 20, 2023 05:25
@abhi18avabhi18av
synchronize #3636
concat-update
Status Failure
Total duration 20m 36s
Artifacts 2

test.yml

on: pull_request
pytest-changes
10s
pytest-changes
nf-test-changes
6s
nf-test-changes
prettier
55s
prettier
editorconfig
17s
editorconfig
Matrix: nf-core-lint
Matrix: pytest
Matrix: nf-test
confirm-pass
5s
confirm-pass
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Annotations

5 errors and 4 warnings
pytest (subworkflows/vcf_annotate_ensemblvep_snpeff, singularity)
Process completed with exit code 1.
pytest (bcftools/concat, docker)
Process completed with exit code 1.
pytest (subworkflows/vcf_annotate_ensemblvep_snpeff, docker)
Process completed with exit code 1.
pytest (bcftools/concat, singularity)
Process completed with exit code 1.
confirm-pass
Process completed with exit code 1.
pytest (subworkflows/vcf_annotate_ensemblvep_snpeff, singularity)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/upload-artifact@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
pytest (bcftools/concat, docker)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/upload-artifact@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
pytest (subworkflows/vcf_annotate_ensemblvep_snpeff, docker)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/upload-artifact@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
pytest (bcftools/concat, singularity)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/upload-artifact@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/

Artifacts

Produced during runtime
Name Size
logs-docker- Expired
1.69 GB
logs-singularity- Expired
1.65 GB