Wave with Docker and Spack #66
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name: Wave | |
# When environment.yml is changed | |
on: | |
pull_request: | |
paths: | |
- "**/environment.yml" | |
- "**/Dockerfile" | |
- "**/spack.yml" | |
env: | |
WAVE_VER: "1.2.0" | |
jobs: | |
gen-matrix: | |
name: generate-matrix | |
runs-on: ubuntu-latest | |
outputs: | |
conda-matrix: ${{ steps.conda-diff.outputs.all_changed_files }} | |
docker-matrix: ${{ steps.docker-diff.outputs.all_changed_files }} | |
spack-matrix: ${{ steps.spack-diff.outputs.all_changed_files }} | |
steps: | |
- uses: actions/checkout@v4 | |
- name: Find conda differences | |
id: conda-diff | |
uses: tj-actions/changed-files@v42 | |
with: | |
json: true | |
quotepath: false | |
files: | | |
modules/**/environment.yml | |
- name: Find Dockerfile differences | |
id: docker-diff | |
uses: tj-actions/changed-files@v42 | |
with: | |
json: true | |
quotepath: false | |
files: | | |
modules/**/Dockerfile | |
- name: Find Spack differences | |
id: spack-diff | |
uses: tj-actions/changed-files@v42 | |
with: | |
json: true | |
quotepath: false | |
files: | | |
modules/**/spack.yml | |
conda-build: | |
if: "${{ fromJson(needs.gen-matrix.outputs.conda-matrix) }}" | |
needs: gen-matrix | |
name: Conda | |
runs-on: ubuntu-latest | |
timeout-minutes: 60 | |
strategy: | |
fail-fast: false | |
matrix: "${{ fromJson(needs.gen-matrix.outputs.conda-matrix) }}" | |
steps: | |
# Use the @nf-core-bot token to check out so we can push later | |
- uses: actions/checkout@v4 | |
- name: Install wave-cli | |
run: | | |
wget -q https://github.com/seqeralabs/wave-cli/releases/download/v${WAVE_VER}/wave-${WAVE_VER}-linux-x86_64 | |
sudo mv wave-${WAVE_VER}-linux-x86_64 /usr/local/bin/wave | |
chmod +x /usr/local/bin/wave | |
- name: Create a registry name | |
uses: actions/github-script@v7 | |
id: registry-name | |
with: | |
result-encoding: string | |
script: | | |
return '${{ matrix.files }}'.replace('modules/nf-core/', '').replace('/environment.yml', '').replace('/', '_'); | |
- name: Build container | |
run: | | |
wave --conda-file "${{ matrix.files }}" \ | |
--freeze \ | |
--await \ | |
--build-repo quay.io/nf-core/modules/${{steps.registry-name.outputs.result}} \ | |
--cache-repository quay.io/nf-core/wave-cache \ | |
--tower-token ${{ secrets.TOWER_ACCESS_TOKEN }} \ | |
--tower-workspace-id ${{ secrets.TOWER_WORKSPACE_ID }} | |
docker-build: | |
if: "${{ fromJson(needs.gen-matrix.outputs.docker-matrix) }}" | |
needs: gen-matrix | |
name: Docker | |
runs-on: ubuntu-latest | |
timeout-minutes: 60 | |
strategy: | |
fail-fast: false | |
matrix: "${{ fromJson(needs.gen-matrix.outputs.docker-matrix) }}" | |
steps: | |
# Use the @nf-core-bot token to check out so we can push later | |
- uses: actions/checkout@v4 | |
- name: Install wave-cli | |
run: | | |
wget -q https://github.com/seqeralabs/wave-cli/releases/download/v${WAVE_VER}/wave-${WAVE_VER}-linux-x86_64 | |
sudo mv wave-${WAVE_VER}-linux-x86_64 /usr/local/bin/wave | |
chmod +x /usr/local/bin/wave | |
- name: Create a registry name | |
uses: actions/github-script@v7 | |
id: registry-name | |
with: | |
result-encoding: string | |
script: | | |
return '${{ matrix.files }}'.replace('modules/nf-core/', '').replace('/Dockerfile', '').replace('/', '_'); | |
- name: Build container | |
run: | | |
wave -f "${{ matrix.files }}" \ | |
--freeze \ | |
--await \ | |
--build-repo quay.io/nf-core/modules/${{steps.registry-name.outputs.result}} \ | |
--cache-repository quay.io/nf-core/wave-cache \ | |
--tower-token ${{ secrets.TOWER_ACCESS_TOKEN }} \ | |
--tower-workspace-id ${{ secrets.TOWER_WORKSPACE_ID }} | |
spack-build: | |
if: "${{ fromJson(needs.gen-matrix.outputs.spack-matrix) }}" | |
needs: gen-matrix | |
name: Spack | |
runs-on: ubuntu-latest | |
timeout-minutes: 60 | |
strategy: | |
fail-fast: false | |
matrix: "${{ fromJson(needs.gen-matrix.outputs.spack-matrix) }}" | |
steps: | |
# Use the @nf-core-bot token to check out so we can push later | |
- uses: actions/checkout@v4 | |
- name: Install wave-cli | |
run: | | |
wget -q https://github.com/seqeralabs/wave-cli/releases/download/v${WAVE_VER}/wave-${WAVE_VER}-linux-x86_64 | |
sudo mv wave-${WAVE_VER}-linux-x86_64 /usr/local/bin/wave | |
chmod +x /usr/local/bin/wave | |
- name: Create a registry name | |
uses: actions/github-script@v7 | |
id: registry-name | |
with: | |
result-encoding: string | |
script: | | |
return '${{ matrix.files }}'.replace('modules/nf-core/', '').replace('/spack.yml', '').replace('/', '_'); | |
- name: Build container | |
run: | | |
wave --spack-file "${{ matrix.files }}" \ | |
--freeze \ | |
--await \ | |
--build-repo quay.io/nf-core/modules/${{steps.registry-name.outputs.result}} \ | |
--cache-repository quay.io/nf-core/wave-cache \ | |
--tower-token ${{ secrets.TOWER_ACCESS_TOKEN }} \ | |
--tower-workspace-id ${{ secrets.TOWER_WORKSPACE_ID }} |