test identical input and output names

nf-core · Jan 10, 2025 · 1b441a1 · 1b441a1
1 parent 194796e
commit 1b441a1
Showing 1 changed file with 2 additions and 0 deletions.
diff --git a/modules/nf-core/scds/main.nf b/modules/nf-core/scds/main.nf
@@ -20,10 +20,12 @@ process SCDS {
 
     script:
     prefix = task.ext.prefix ?: "${meta.id}"
+    if ("${rds}" == "${prefix}.rds") error "Input and output names are the same, use \"task.ext.prefix\" to disambiguate!"
     template 'scds.R'
 
     stub:
     def prefix = task.ext.prefix ?: "${meta.id}"
+    if ("${rds}" == "${prefix}.rds") error "Input and output names are the same, use \"task.ext.prefix\" to disambiguate!"
     """
     touch ${prefix}.rds
     touch ${prefix}.csv