Adding conda-check in stub-section

nf-core · Aug 1, 2023 · c332c41 · c332c41
1 parent b17835c
commit c332c41
Showing 1 changed file with 4 additions and 0 deletions.
diff --git a/modules/nf-core/basicpy/main.nf b/modules/nf-core/basicpy/main.nf
@@ -32,6 +32,10 @@ process BASICPY {
     """
 
     stub:
+    // Exit if running this module with -profile conda / -profile mamba
+    if (workflow.profile.tokenize(',').intersect(['conda', 'mamba']).size() >= 1) {
+        error "Basicpy module does not support Conda. Please use Docker / Singularity instead."
+    }
     """
     touch ${prefix}.-dfp.tiff
     touch ${prefix}.-dfp.tiff