Update environment to biocontainers

nf-core · Oct 30, 2024 · d4cd986 · d4cd986
1 parent 6fd1de5
commit d4cd986
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Showing 2 changed files with 3 additions and 2 deletions.
diff --git a/modules/nf-core/scds/environment.yml b/modules/nf-core/scds/environment.yml
@@ -4,3 +4,4 @@ channels:
 dependencies:
   - bioconda::bioconductor-scds=1.18.0
   - conda-forge::r-seurat=5.1.0
+  - conda-forge::r-xgboost=1.7.6
diff --git a/modules/nf-core/scds/main.nf b/modules/nf-core/scds/main.nf
@@ -4,8 +4,8 @@ process SCDS {
 
     conda "${moduleDir}/environment.yml"
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
-        'oras://community.wave.seqera.io/library/bioconductor-scds_r-seurat:9433ff91d563da96':
-        'community.wave.seqera.io/library/bioconductor-scds_r-seurat:0a9b33d0ff3ee819' }"
+        'https://depot.galaxyproject.org/singularity/bioconductor-scds:1.18.0--r43hdfd78af_0':
+        'biocontainers/bioconductor-scds:1.18.0--r43hdfd78af_0' }"
 
     input:
     tuple val(meta), path(rds)