Add same file clash check to bioawk (#5926)

nf-core · Jul 5, 2024 · dee3479 · dee3479
1 parent 27e1708
commit dee3479
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/modules/nf-core/bioawk/main.nf b/modules/nf-core/bioawk/main.nf
@@ -20,7 +20,7 @@ process BIOAWK {
     script:
     def args  = task.ext.args ?: '' // args is used for the main arguments of the tool
     prefix = task.ext.prefix ?: "${meta.id}"
-
+    if ("${input}" == "${prefix}") error "Input and output names are the same, use \"task.ext.prefix\" to disambiguate!"
     def VERSION = '1.0' // WARN: Version information not provided by tool on CLI. Please update this string when bumping container versions.
     """
     bioawk \\