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dummy: Make a change
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edmundmiller committed Aug 23, 2024
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1 change: 1 addition & 0 deletions modules/nf-core/bowtie/align/main.nf
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Expand Up @@ -29,6 +29,7 @@ process BOWTIE_ALIGN {
def endedness = meta.single_end ? "$reads" : "-1 ${reads[0]} -2 ${reads[1]}"
"""
INDEX=\$(find -L ./ -name "*.3.ebwt" | sed 's/\\.3.ebwt\$//')
bowtie \\
--threads $task.cpus \\
--sam \\
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