Changing some stuff to kick off real CI/CD

nf-core · Jul 28, 2023 · f8e5c94 · f8e5c94
1 parent 568afbc
commit f8e5c94
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Showing 2 changed files with 2 additions and 2 deletions.
diff --git a/modules/nf-core/gatk4/haplotypecaller/main.nf b/modules/nf-core/gatk4/haplotypecaller/main.nf
@@ -5,7 +5,7 @@ process GATK4_HAPLOTYPECALLER {
     conda "bioconda::gatk4=4.4.0.0"
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
         'https://depot.galaxyproject.org/singularity/gatk4:4.4.0.0--py36hdfd78af_0':
-        'biocontainers/gatk4:4.4.0.0--py36hdfd78af_0' }"
+        'quay.io/biocontainers/gatk4:4.4.0.0--py36hdfd78af_0' }"
 
     input:
     tuple val(meta), path(input), path(input_index), path(intervals), path(dragstr_model)

diff --git a/modules/nf-core/samtools/sort/main.nf b/modules/nf-core/samtools/sort/main.nf
@@ -5,7 +5,7 @@ process SAMTOOLS_SORT {
     conda "bioconda::samtools=1.17"
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
         'https://depot.galaxyproject.org/singularity/samtools:1.17--h00cdaf9_0' :
-        'biocontainers/samtools:1.17--h00cdaf9_0' }"
+        'quay.io/biocontainers/samtools:1.17--h00cdaf9_0' }"
 
     input:
     tuple val(meta), path(bam)