Skip to content

Commit

Permalink
Update nextflow_schema.json
Browse files Browse the repository at this point in the history
Co-authored-by: Matthias Hörtenhuber <[email protected]>
  • Loading branch information
charles-plessy and mashehu authored Oct 1, 2024
1 parent ce67bc0 commit 4ce0278
Showing 1 changed file with 1 addition and 1 deletion.
2 changes: 1 addition & 1 deletion nextflow_schema.json
Original file line number Diff line number Diff line change
Expand Up @@ -67,7 +67,7 @@
"type": "string",
"enum": ["YASS", "NEAR", "MAM8", "RY128"],
"help_text": "LAST creates a database of seed sequences in the _target_ genome, and provides different ways to generate these seeds. The default (`YASS`) searches for long-and-weak similarities that allow for mismatches but not gaps. Among alternatives, there are `NEAR` for short-and-strong (near-identical) similarities with many gaps (insertions and deletions), `MAM8` to find weak similarities with high sensitivity, but low speed and high memory usage, or `RY128` that reduces run time and memory use, by only seeking seeds at ~1/128 of positions in each sequence, which is useful when the purpose of running this pipeline is only to generate whole-genome dotplots, or when sensitivity for tiny fragments may be unnecessary or undesirable. See <https://gitlab.com/mcfrith/last/-/blob/main/doc/last-seeds.rst> for details.",
"description": "Select the the LAST seed to index the _target_ genome.",
"description": "Select the LAST seed to index the _target_ genome.",
"default": "YASS",
"fa_icon": "fas fa-seedling"
},
Expand Down

0 comments on commit 4ce0278

Please sign in to comment.