Merge pull request #120 from JoseEspinosa/fixes

Call gunzip by file to avoid too argument error
nf-core · Oct 3, 2023 · 91868d1 · 91868d1
2 parents 37ff17f + bc45cd6
commit 91868d1
Showing 1 changed file with 1 addition and 3 deletions.
diff --git a/modules/local/download_pdbmmcif.nf b/modules/local/download_pdbmmcif.nf
@@ -41,9 +41,7 @@ process DOWNLOAD_PDBMMCIF {
         raw
 
     echo "Unzipping all mmCIF files..."
-    find ./raw -type f -name '*.[gG][zZ]' -print0 | while IFS= read -r -d \$'\\0' file; do
-        gunzip "$file"
-    done
+    find ./raw -type f -name '*.[gG][zZ]' -exec gunzip {} \\;
 
     echo "Flattening all mmCIF files..."
     mkdir mmcif_files