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Some minor corrections
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JoseEspinosa committed May 31, 2024
1 parent 2bef5e7 commit b29d676
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2 changes: 1 addition & 1 deletion README.md
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Expand Up @@ -55,7 +55,7 @@ nextflow run nf-core/proteinfold \
--outdir <OUTDIR>
```

The pipeline takes care of downloading the required databases and parameters required by AlphaFold2, Colabfold or ESMFold. In case you have already downloaded the required files, you can skip this step by providing the path using the corresponding parameter [`--alphafold2_db`], [`--colabfold_db`] or [`--esmfold_db`]
The pipeline takes care of downloading the databases and parameters required by AlphaFold2, Colabfold or ESMFold. In case you have already downloaded the required files, you can skip this step by providing the path to the databases in parameters using the corresponding parameter [`--alphafold2_db`], [`--colabfold_db`] or [`--esmfold_db`]

- Typical command to run AlphaFold2 mode:

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1 change: 1 addition & 0 deletions modules/local/download_pdbmmcif.nf
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Expand Up @@ -2,6 +2,7 @@
* Download PDB MMCIF database
*/
process DOWNLOAD_PDBMMCIF {
tag "${source_url_pdb_mmcif}--${source_url_pdb_obsolete}"
label 'process_low'
label 'error_retry'

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