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Dev -> Master for 1.1.0 release #158

Merged
merged 341 commits into from
Jun 25, 2024
Merged

Dev -> Master for 1.1.0 release #158

merged 341 commits into from
Jun 25, 2024
This pull request is big! We’re only showing the most recent 250 commits.

Commits on May 12, 2023

  1. Set a default docker registry outside of profile scope

    @JoseEspinosa
    JoseEspinosa committed May 12, 2023
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  2. Add dev to changelog version and document last change

    @JoseEspinosa
    JoseEspinosa committed May 12, 2023
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  3. Merge pull request #95 from JoseEspinosa/quay_fix 

    Set a default docker registry outside of profile scope
    @JoseEspinosa
    JoseEspinosa authored May 12, 2023
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Commits on May 16, 2023

  1. Change uniclust30 to uniref30 path

    @athbaltzis
    athbaltzis committed May 16, 2023
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  2. Update CHANGELOG

    @athbaltzis
    athbaltzis committed May 16, 2023
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  3. Merge pull request #97 from athbaltzis/dev 

    Change uniclust30 to uniref30 path when using the full BFD database in Alphafold2
    @JoseEspinosa
    JoseEspinosa authored May 16, 2023
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Commits on May 17, 2023

  1. Update colabfold container to python 3.10 and fix bug for multimers

    @athbaltzis
    athbaltzis committed May 17, 2023
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  2. Update docker registry

    @athbaltzis
    athbaltzis committed May 17, 2023
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  3. Revert default docker.registry

    @athbaltzis
    athbaltzis committed May 17, 2023
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  4. Update container in MMSEQS_COLABFOLDSEARCH

    @athbaltzis
    athbaltzis committed May 17, 2023
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  5. Update container for RUN_ALPHAFOLD2 module

    @athbaltzis
    athbaltzis committed May 17, 2023
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Commits on May 18, 2023

  1. Change file read type to any

    @athbaltzis
    athbaltzis committed May 18, 2023
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  2. Fix bug with filename collision

    @athbaltzis
    athbaltzis committed May 18, 2023
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  3. Update RUN_ALPHAFOLD2_MSA and RUN_ALPHAFOLD2_PRED containers

    @athbaltzis
    athbaltzis committed May 18, 2023
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Commits on May 19, 2023

  1. Update container paths and revert type of file read for alphafold dbs

    @athbaltzis
    athbaltzis committed May 19, 2023
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  2. Add dockerfiles

    @athbaltzis
    athbaltzis committed May 19, 2023
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  3. Fix linting

    @athbaltzis
    athbaltzis committed May 19, 2023
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  4. Fix linting

    @athbaltzis
    athbaltzis committed May 19, 2023
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  5. Fix lintint 3rd attempt

    @athbaltzis
    athbaltzis committed May 19, 2023
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  6. Fix linting 4th attempt

    @athbaltzis
    athbaltzis committed May 19, 2023
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  7. Update CHANGELOG

    @athbaltzis
    athbaltzis committed May 19, 2023
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  8. Add quay.io source for singularity pulls

    @athbaltzis
    athbaltzis committed May 19, 2023
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  9. Merge pull request #100 from athbaltzis/dev 

    Update containers for local modules
    @athbaltzis
    athbaltzis authored May 19, 2023
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Commits on May 20, 2023

  1. Update gpu flag for colabfold

    @athbaltzis
    athbaltzis committed May 20, 2023
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Commits on May 22, 2023

  1. Merge pull request #101 from athbaltzis/dev 

    Update gpu flag for colabfold
    @JoseEspinosa
    JoseEspinosa authored May 22, 2023
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Commits on Jun 1, 2023

  1. Update COLABFOLD_BATCH dockerfile

    @athbaltzis
    athbaltzis committed Jun 1, 2023
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  2. Update alphafold2 full_dbs parameter description

    @athbaltzis
    athbaltzis committed Jun 1, 2023
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  3. Put white bg to metro map png

    @athbaltzis
    athbaltzis committed Jun 1, 2023
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  4. Update CHANGELOG

    @athbaltzis
    athbaltzis committed Jun 1, 2023
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Commits on Jun 2, 2023

  1. Update colabfold output name pattern

    @athbaltzis
    athbaltzis committed Jun 2, 2023
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  2. Rename figs

    @athbaltzis
    athbaltzis committed Jun 2, 2023
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  3. Update README.md 

    Co-authored-by: Jose Espinosa-Carrasco <[email protected]>
    @athbaltzis @JoseEspinosa
    athbaltzis and JoseEspinosa authored Jun 2, 2023
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  4. Merge pull request #105 from athbaltzis/dev 

    Update COLABFOLD_BATCH docker container, metro map figure and nextflow schema description
    @athbaltzis
    athbaltzis authored Jun 2, 2023
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Commits on Jun 14, 2023

  1. Add singularity.registry = 'quay.io' and bump nxf version to 23.04.0

    @JoseEspinosa
    JoseEspinosa committed Jun 14, 2023
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  2. Update nf-core containers declaration

    @JoseEspinosa
    JoseEspinosa committed Jun 14, 2023
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  3. Fix lint and update changelog

    @JoseEspinosa
    JoseEspinosa committed Jun 14, 2023
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  4. Use nxf version 23.04.0 in ci

    @JoseEspinosa
    JoseEspinosa committed Jun 14, 2023
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  5. Merge pull request #106 from JoseEspinosa/updates 

    Add singularity.registry = 'quay.io' and bump NF version to 23.04.0
    @JoseEspinosa
    JoseEspinosa authored Jun 14, 2023
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Commits on Jun 29, 2023

  1. Change double quotes for single quotes to avoid expansion

    @JoseEspinosa
    JoseEspinosa committed Jun 29, 2023
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  2. Update changelog

    @JoseEspinosa
    JoseEspinosa committed Jun 29, 2023
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Commits on Jun 30, 2023

  1. Adapt command for POSIX portability

    @JoseEspinosa
    JoseEspinosa committed Jun 30, 2023
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  2. Merge pull request #109 from JoseEspinosa/fixes 

    Fix DOWNLOAD_PDBMMCIF
    @JoseEspinosa
    JoseEspinosa authored Jun 30, 2023
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  3. Template update for nf-core/tools version 2.9

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    nf-core-bot committed Jun 30, 2023
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Commits on Jul 3, 2023

  1. Merge branch 'TEMPLATE' of https://github.com/nf-core/proteinfold int… 

    …o merge-template-2.9
    @JoseEspinosa
    JoseEspinosa committed Jul 3, 2023
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  2. Remove old params not longer used by nf-validation

    @JoseEspinosa
    JoseEspinosa committed Jul 3, 2023
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  3. Modify methodsDescriptionText in WorkflowColabfold and WorkflowEsmfold

    @JoseEspinosa
    JoseEspinosa committed Jul 3, 2023
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  4. Fix lints

    @JoseEspinosa
    JoseEspinosa committed Jul 3, 2023
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  5. Remove tracedir according to current template

    @JoseEspinosa
    JoseEspinosa committed Jul 3, 2023
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Commits on Jul 11, 2023

  1. Update assets/multiqc_config.yml 

    Co-authored-by: Maxime U Garcia <[email protected]>
    @JoseEspinosa @maxulysse
    JoseEspinosa and maxulysse authored Jul 11, 2023
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  2. Update assets/multiqc_config.yml 

    Co-authored-by: Maxime U Garcia <[email protected]>
    @JoseEspinosa @maxulysse
    JoseEspinosa and maxulysse authored Jul 11, 2023
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  3. Fix nf-core lint

    @JoseEspinosa
    JoseEspinosa committed Jul 11, 2023
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  4. Merge branch 'merge-template-2.9' of https://github.com/JoseEspinosa/… 

    …nf-core-proteinfold into merge-template-2.9
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    JoseEspinosa committed Jul 11, 2023
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  5. Merge pull request #111 from JoseEspinosa/merge-template-2.9 

    Merge template 2.9
    @JoseEspinosa
    JoseEspinosa authored Jul 11, 2023
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Commits on Jul 21, 2023

  1. Add file-path and mimetype to schema paths

    @JoseEspinosa
    JoseEspinosa committed Jul 21, 2023
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  2. Use nf-validation plugin for parameter validation

    @JoseEspinosa
    JoseEspinosa committed Jul 21, 2023
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  3. Add input schema

    @JoseEspinosa
    JoseEspinosa committed Jul 21, 2023
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  4. Replace input_check by nf-validation

    @JoseEspinosa
    JoseEspinosa committed Jul 21, 2023
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  5. Make lint happy

    @JoseEspinosa
    JoseEspinosa committed Jul 21, 2023
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  6. Update changelog

    @JoseEspinosa
    JoseEspinosa committed Jul 21, 2023
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  7. Remove unused validationSchemaIgnoreParams

    @JoseEspinosa
    JoseEspinosa committed Jul 21, 2023
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  8. Making lint happy

    @JoseEspinosa
    JoseEspinosa committed Jul 21, 2023
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Commits on Jul 24, 2023

  1. Merge pull request #112 from JoseEspinosa/updates 

    Use nf-validation plugin for parameter and samplesheet validation
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    JoseEspinosa authored Jul 24, 2023
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Commits on Sep 6, 2023

  1. Update paths to test dbs

    @JoseEspinosa
    JoseEspinosa committed Sep 6, 2023
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  2. Update changelog

    @JoseEspinosa
    JoseEspinosa committed Sep 6, 2023
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Commits on Sep 7, 2023

  1. Fix indent

    @JoseEspinosa
    JoseEspinosa committed Sep 7, 2023
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  2. Update changelog

    @JoseEspinosa
    JoseEspinosa committed Sep 7, 2023
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  3. Merge pull request #114 from JoseEspinosa/updates 

    Update paths to test dbs
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    JoseEspinosa authored Sep 7, 2023
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Commits on Sep 25, 2023

  1. Template update for nf-core/tools version 2.10

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Commits on Sep 26, 2023

  1. Merge branch 'TEMPLATE' of https://github.com/nf-core/proteinfold int… 

    …o merge_temp_2.10
    @JoseEspinosa
    JoseEspinosa committed Sep 26, 2023
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  2. Add dump_parameters to the other subworkflows

    @JoseEspinosa
    JoseEspinosa committed Sep 26, 2023
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  3. Update changelog

    @JoseEspinosa
    JoseEspinosa committed Sep 26, 2023
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Commits on Sep 27, 2023

  1. Merge pull request #117 from JoseEspinosa/merge_temp_2.10 

    Merge template v2.10
    @JoseEspinosa
    JoseEspinosa authored Sep 27, 2023
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  2. Fix zenodo link

    @JoseEspinosa
    JoseEspinosa committed Sep 27, 2023
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  3. Merge pull request #118 from JoseEspinosa/fixes 

    Fix zenodo link
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    JoseEspinosa authored Sep 27, 2023
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Commits on Sep 29, 2023

  1. Fix "Argument list too long" issue

    @JoseEspinosa
    JoseEspinosa committed Sep 29, 2023
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  2. Fix changelog msg

    @JoseEspinosa
    JoseEspinosa committed Sep 29, 2023
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  3. Format changelog

    @JoseEspinosa
    JoseEspinosa committed Sep 29, 2023
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  4. Escape properly bash command

    @JoseEspinosa
    JoseEspinosa committed Sep 29, 2023
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  5. Merge pull request #119 from JoseEspinosa/fixes 

    Fix "Argument list too long" issue
    @JoseEspinosa
    JoseEspinosa authored Sep 29, 2023
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Commits on Oct 3, 2023

  1. Call gunzip by file to avoid too argument error

    @JoseEspinosa
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  2. Merge pull request #120 from JoseEspinosa/fixes 

    Call gunzip by file to avoid too argument error
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Commits on Dec 19, 2023

  1. Template update for nf-core/tools version 2.11

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Commits on Dec 20, 2023

  1. Template update for nf-core/tools version 2.11.1

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Commits on Jan 29, 2024

  1. Template update for nf-core/tools version 2.12

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Commits on Jan 30, 2024

  1. Merge branch 'TEMPLATE' of https://github.com/nf-core/proteinfold int… 

    …o merging-template-2.12
    @JoseEspinosa
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  2. Make prettier happy

    @JoseEspinosa
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  3. Make prettier happy

    @JoseEspinosa
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  4. Fix schema

    @JoseEspinosa
    JoseEspinosa committed Jan 30, 2024
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  5. [automated] Fix linting with Prettier

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  6. Merge pull request #127 from JoseEspinosa/merging-template-2.12 

    Merging template 2.12
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Commits on Feb 20, 2024

  1. Template update for nf-core/tools version 2.13

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Commits on Feb 29, 2024

  1. First iteration towards lib removal

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  2. Clean alphafold2 workflow

    @JoseEspinosa
    JoseEspinosa committed Feb 29, 2024
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  3. Clean colabfold workflow

    @JoseEspinosa
    JoseEspinosa committed Feb 29, 2024
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  4. Clean esmfold

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    JoseEspinosa committed Feb 29, 2024
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  5. Clean prepare_esmfold_dbs

    @JoseEspinosa
    JoseEspinosa committed Feb 29, 2024
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  6. Fix stub section

    @JoseEspinosa
    JoseEspinosa committed Feb 29, 2024
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  7. Update main

    @JoseEspinosa
    JoseEspinosa committed Feb 29, 2024
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  8. Update subworkflows

    @JoseEspinosa
    JoseEspinosa committed Feb 29, 2024
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  9. Update missing subworkflows

    @JoseEspinosa
    JoseEspinosa committed Feb 29, 2024
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  10. Add take to prepare subworkflow

    @JoseEspinosa
    JoseEspinosa committed Feb 29, 2024
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  11. Fix colabfold workflow

    @JoseEspinosa
    JoseEspinosa committed Feb 29, 2024
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  12. Template update for nf-core/tools version 2.13.1

    @nf-core-bot
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  13. Remove prints

    @JoseEspinosa
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  14. Remove lib folder

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  15. Update changelog

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  16. Make lint happy

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  17. Fix lint

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  18. Fix lint

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  19. Fix error

    @JoseEspinosa
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  20. Make nf-core lint happy

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Commits on Mar 1, 2024

  1. Fix changelog

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  2. Merge pull request #132 from JoseEspinosa/fixes 

    Remove lib folder
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Commits on Mar 5, 2024

  1. Merge branch 'TEMPLATE' of https://github.com/nf-core/proteinfold int… 

    …o merging-template-2.13.1
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Commits on Mar 6, 2024

  1. Remove dumpsoftwareversions from modules.json

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  2. Remove template updated files from files unchanged

    @JoseEspinosa
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  3. Fix error introduced by the template merge

    @JoseEspinosa
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  4. Remove duplicated line

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  5. Merge pull request #134 from JoseEspinosa/merging-template-2.13.1 

    Merging template 2.13.1
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Commits on Mar 18, 2024

  1. Update alphafold standard container

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Commits on Mar 19, 2024

  1. Update dockerfile alphafold standard

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  2. Update docker image for af2 msa for testing

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Commits on Mar 20, 2024

  1. Update alphafold dockerfiles

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  2. Use dev image for split mode (prediction step)

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Commits on Mar 22, 2024

  1. Merge pull request #136 from JoseEspinosa/fixes 

    Update alphafold images and Dockerfiles
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  2. Add error to modules that can not use conda

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  3. Update changelog

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Commits on Apr 2, 2024

  1. Merge pull request #138 from JoseEspinosa/fixes 

    Add error to modules that can not use conda
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  2. Include esmfold small test

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  3. Add the esmfold test to ci

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  4. Merge pull request #139 from JoseEspinosa/fixes 

    Include esmfold small tests and run it in CI
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Commits on Apr 8, 2024

  1. fix name of mmseq output channel db_indexed

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  2. Merge pull request #143 from ziadbkh/master 

    fix name of mmseq output channel db_indexed
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Commits on Apr 18, 2024

  1. Force value channels to run all samples

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  2. Nicely align comments

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  3. Update changelog

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  4. Merge remote-tracking branch 'upstream/dev' into updates

    @JoseEspinosa
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  5. Update subworkflows/local/prepare_alphafold2_dbs.nf 

    Co-authored-by: Luisa Santus <[email protected]>
    @JoseEspinosa @luisas
    JoseEspinosa and luisas authored Apr 18, 2024
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  6. Update link parameters name in schema, nextflow config, etc.

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  7. Merge branch 'updates' of https://github.com/JoseEspinosa/nf-core-pro… 

    …teinfold into updates
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  8. Merge pull request #146 from JoseEspinosa/updates 

    Fix running only first sample when db downloaded
    @JoseEspinosa
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  9. Update aria2

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  10. Update mmseqs_createindex

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  11. Update rest of modules

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  12. Merge branch 'dev' of https://github.com/JoseEspinosa/nf-core-protein… 

    …fold into dev
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Commits on Apr 19, 2024

  1. Some plumbing after modules update

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  2. Make prettier happy

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    JoseEspinosa committed Apr 19, 2024
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  3. test

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Commits on Apr 23, 2024

  1. Get rid of first to force value channel

    @JoseEspinosa
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  2. Update CHANGELOG

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Commits on Apr 24, 2024

  1. Merge pull request #149 from JoseEspinosa/dev 

    Update modules to last version
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    JoseEspinosa authored Apr 24, 2024
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  2. Add test for alphafold download

    @JoseEspinosa
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  3. Add test for colabfold download

    @JoseEspinosa
    JoseEspinosa committed Apr 24, 2024
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  4. Update nextflow config

    @JoseEspinosa
    JoseEspinosa committed Apr 24, 2024
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  5. Add download test to ci

    @JoseEspinosa
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  6. Update changelog

    @JoseEspinosa
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  7. Update CHANGELOG.md 

    Co-authored-by: Luisa Santus <[email protected]>
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  8. Merge pull request #151 from JoseEspinosa/updates 

    Create test profile for download processes/subworkflows
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  9. Add skip_multiqc parameter

    @JoseEspinosa
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  10. Add skip_multiqc to alphafold2 workflow

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  11. Add skip_multiqc to colabfold workflow

    @JoseEspinosa
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  12. Add skip_multiqc to esmfold workflow

    @JoseEspinosa
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  13. Update changelog

    @JoseEspinosa
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  14. Make linting happy

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  15. Merge pull request #152 from JoseEspinosa/updates 

    Add skip_multiqc parameter
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    JoseEspinosa authored Apr 24, 2024
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Commits on Apr 29, 2024

  1. Change link protocol from ftp to https

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Commits on Apr 30, 2024

  1. Merge branch 'updates' of https://github.com/JoseEspinosa/nf-core-pro… 

    …teinfold into updates
    @JoseEspinosa
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  2. Update paths to Colabfold uniref30

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Commits on May 2, 2024

  1. Update docker file

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  2. clean dockerfiler

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Commits on May 6, 2024

  1. Update images for colabfold

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Commits on May 8, 2024

  1. Template update for nf-core/tools version 2.14.0

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Commits on May 9, 2024

  1. Template update for nf-core/tools version 2.14.1

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Commits on May 14, 2024

  1. Update dockerfile

    @JoseEspinosa
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  2. Merge branch 'TEMPLATE' of https://github.com/nf-core/proteinfold int… 

    …o merge_template_2.14.1
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  3. Add pipelines_testdata_base_path param

    @JoseEspinosa
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  4. Update changelog

    @JoseEspinosa
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  5. rm CUSTOM_DUMPSOFTWAREVERSIONS from modules.config

    @JoseEspinosa
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  6. Revert testing leak

    @JoseEspinosa
    JoseEspinosa committed May 14, 2024
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  7. Fix tyop

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  8. :'(

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Commits on May 15, 2024

  1. Merge pull request #155 from JoseEspinosa/merge_template_2.14.1 

    Merge template 2.14.1
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  2. Merge remote-tracking branch 'upstream/dev' into updates

    @JoseEspinosa
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  3. rm cp as is file is named directly by colabfold

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  4. Retrieving files without copying as now the id is used by colabfold f… 

    …or the file naming
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Commits on May 16, 2024

  1. Fix typo

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Commits on May 30, 2024

  1. Fix LD_LIBRARY_PATH

    @JoseEspinosa
    JoseEspinosa committed May 30, 2024
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  2. Update changelog

    @JoseEspinosa
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  3. Make lint happy

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  4. Fix schema

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Commits on May 31, 2024

  1. Merge pull request #156 from JoseEspinosa/updates 

    Update DBs URLs  and Dockerfiles
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  2. Bump version 1.1.0 on changelog

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  3. Bump version 1.1.0 to images

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  4. Bump version 1.1.0 to readme

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  5. Some minor corrections

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Commits on Jun 1, 2024

  1. Bump v1.1.0 to multiqc config

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Commits on Jun 3, 2024

  1. Merge pull request #157 from JoseEspinosa/bump_v1.1.0 

    Bump v1.1.0
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  2. Update mgnify fasta

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  3. Merge pull request #159 from JoseEspinosa/updates 

    Update magnify paths
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Commits on Jun 4, 2024

  1. Publish pdb_seqres when from prepare_alphafold2_dbs

    @JoseEspinosa
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  2. Publish pdb_seqres when downloaded using prepare_alphafold2_dbs

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  3. Merge branch 'updates' of https://github.com/JoseEspinosa/nf-core-pro… 

    …teinfold into updates
    @JoseEspinosa
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  4. Add previous PR and update parameter table

    @JoseEspinosa
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  5. Simplify CI by using matrix of parameterers

    @JoseEspinosa
    JoseEspinosa committed Jun 4, 2024
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  6. Update README

    @JoseEspinosa
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  7. Modify contributing as suggested in review

    @JoseEspinosa
    JoseEspinosa committed Jun 4, 2024
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  8. Fix several comments of tests config files

    @JoseEspinosa
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  9. Apply review suggestions to usage

    @JoseEspinosa
    JoseEspinosa committed Jun 4, 2024
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  10. Align comments of subworkflows

    @JoseEspinosa
    JoseEspinosa committed Jun 4, 2024
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  11. Create channels instead of using just file method

    @JoseEspinosa
    JoseEspinosa committed Jun 4, 2024
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Commits on Jun 5, 2024

  1. Create channels instead of using just file method

    @JoseEspinosa
    JoseEspinosa committed Jun 5, 2024
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  2. Add meta to aria2 call

    @JoseEspinosa
    JoseEspinosa committed Jun 5, 2024
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Commits on Jun 7, 2024

  1. Force value channel for bfd

    @JoseEspinosa
    JoseEspinosa committed Jun 7, 2024
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Commits on Jun 10, 2024

  1. Create channels instead of just using file method

    @JoseEspinosa
    JoseEspinosa committed Jun 10, 2024
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  2. Update docs

    @JoseEspinosa
    JoseEspinosa committed Jun 10, 2024
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  3. Make lint happy

    @JoseEspinosa
    JoseEspinosa committed Jun 10, 2024
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  4. Make nf-core lint happy

    @JoseEspinosa
    JoseEspinosa committed Jun 10, 2024
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  5. Add uniref30_alphafold2_link parameter to changelog

    @JoseEspinosa
    JoseEspinosa committed Jun 10, 2024
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  6. Merge branch 'updates' of https://github.com/JoseEspinosa/nf-core-pro… 

    …teinfold into updates
    @JoseEspinosa
    JoseEspinosa committed Jun 10, 2024
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Commits on Jun 11, 2024

  1. Make lint happy

    @JoseEspinosa
    JoseEspinosa committed Jun 11, 2024
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  2. Merge pull request #160 from JoseEspinosa/updates 

    Address review comments and update documentation
    @JoseEspinosa
    JoseEspinosa authored Jun 11, 2024
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  3. Modify path to esmfold db in test_full

    @JoseEspinosa
    JoseEspinosa committed Jun 11, 2024
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Commits on Jun 12, 2024

  1. Merge pull request #161 from JoseEspinosa/updates 

    Modify path to esmfold db in its test_full config
    @JoseEspinosa
    JoseEspinosa authored Jun 12, 2024
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Commits on Jun 17, 2024

  1. Fix file staging

    @JoseEspinosa
    JoseEspinosa committed Jun 17, 2024
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  2. Merge remote-tracking branch 'upstream/dev' into fixes

    @JoseEspinosa
    JoseEspinosa committed Jun 17, 2024
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  3. Merge pull request #162 from JoseEspinosa/fixes 

    Fix channel creation for pdb_mmcfiles
    @JoseEspinosa
    JoseEspinosa authored Jun 17, 2024
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Commits on Jun 19, 2024

  1. Fix full test and update release date

    @JoseEspinosa
    JoseEspinosa committed Jun 19, 2024
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  2. Fix changelog

    @JoseEspinosa
    JoseEspinosa committed Jun 19, 2024
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  3. Merge pull request #163 from JoseEspinosa/fixes 

    Fix full test and update release date
    @JoseEspinosa
    JoseEspinosa authored Jun 19, 2024
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Commits on Jun 20, 2024

  1. Always upload logs after trying to launch AWS megatests

    @adamrtalbot
    adamrtalbot authored Jun 20, 2024
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  2. Fix tyop

    @JoseEspinosa
    JoseEspinosa committed Jun 20, 2024
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  3. Merge remote-tracking branch 'upstream/dev' into fixes

    @JoseEspinosa
    JoseEspinosa committed Jun 20, 2024
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  4. Merge pull request #164 from JoseEspinosa/fixes 

    Fix tyop in aws full test CI
    @JoseEspinosa
    JoseEspinosa authored Jun 20, 2024
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Commits on Jun 21, 2024

  1. Merge pull request #165 from nf-core/always-upload-logs-after-megatest 

    Always upload logs after trying to launch AWS megatests
    @JoseEspinosa
    JoseEspinosa authored Jun 21, 2024
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  2. Discriminate between num_recycles of esmfold and colabfold (default v… 

    …alue different)
    @JoseEspinosa
    JoseEspinosa committed Jun 21, 2024
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  3. Update readme

    @JoseEspinosa
    JoseEspinosa committed Jun 21, 2024
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  4. Add mention to AWS Open Data Sponsorship Program

    @JoseEspinosa
    JoseEspinosa committed Jun 21, 2024
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  5. Merge remote-tracking branch 'upstream/dev' into fixes

    @JoseEspinosa
    JoseEspinosa committed Jun 21, 2024
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  6. Update changelog

    @JoseEspinosa
    JoseEspinosa committed Jun 21, 2024
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  7. Merge pull request #166 from JoseEspinosa/fixes 

    Create 2 different parameters for Colabfold and ESMfold number of recycles
    @JoseEspinosa
    JoseEspinosa authored Jun 21, 2024
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  8. Update date

    @JoseEspinosa
    JoseEspinosa committed Jun 21, 2024
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  9. Merge pull request #167 from JoseEspinosa/updates 

    Update release date
    @JoseEspinosa
    JoseEspinosa authored Jun 21, 2024
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Commits on Jun 25, 2024

  1. Final prerelease updates

    @JoseEspinosa
    JoseEspinosa committed Jun 25, 2024
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  2. Update CHANGELOG.md 

    Co-authored-by: Matthias Hörtenhuber <[email protected]>
    @JoseEspinosa @mashehu
    JoseEspinosa and mashehu authored Jun 25, 2024
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  3. Apply suggestions review

    @JoseEspinosa
    JoseEspinosa committed Jun 25, 2024
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  4. Merge pull request #168 from JoseEspinosa/updates 

    Final prerelease updates
    @JoseEspinosa
    JoseEspinosa authored Jun 25, 2024
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  5. Use stable version of tools for download CI

    @JoseEspinosa
    JoseEspinosa committed Jun 25, 2024
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  6. Merge remote-tracking branch 'upstream/dev' into updates

    @JoseEspinosa
    JoseEspinosa committed Jun 25, 2024
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  7. Get rid of leak

    @JoseEspinosa
    JoseEspinosa committed Jun 25, 2024
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  8. Merge pull request #169 from JoseEspinosa/updates 

    Fix download CI
    @JoseEspinosa
    JoseEspinosa authored Jun 25, 2024
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