Bump version 1.2.0 dev

CHANGELOG.md

@@ -7,6 +7,12 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
 
 ### Enhancements & fixes
 
+## [[1.1.1](https://github.com/nf-core/proteinfold/releases/tag/1.1.1)] - 2025-07-30
+
+### Enhancements & fixes
+
+- Minor patch release to fix multiqc report.
+
 ## [[1.1.0](https://github.com/nf-core/proteinfold/releases/tag/1.1.0)] - 2025-06-25
 
 ### Credits
@@ -24,6 +30,8 @@ Special thanks to the following for their contributions to the release:
 
 Thank you to everyone else that has contributed by reporting bugs, enhancements or in any other way, shape or form.
 
+## [[1.1.0](https://github.com/nf-core/proteinfold/releases/tag/1.1.0)] - 2025-06-21
+
 ### Enhancements & fixes
 
 - [[#80](https://github.com/nf-core/proteinfold/pull/80)] - Add `accelerator` directive to GPU processes when `params.use_gpu` is true.

README.md

@@ -6,7 +6,7 @@
 </h1>
 
 [![GitHub Actions CI Status](https://github.com/nf-core/proteinfold/actions/workflows/ci.yml/badge.svg)](https://github.com/nf-core/proteinfold/actions/workflows/ci.yml)
-[![GitHub Actions Linting Status](https://github.com/nf-core/proteinfold/actions/workflows/linting.yml/badge.svg)](https://github.com/nf-core/proteinfold/actions/workflows/linting.yml)[![AWS CI](https://img.shields.io/badge/CI%20tests-full%20size-FF9900?labelColor=000000&logo=Amazon%20AWS)](https://nf-co.re/proteinfold/results)[![Cite with Zenodo](http://img.shields.io/badge/DOI-10.5281/zenodo.XXXXXXX-1073c8?labelColor=000000)](https://doi.org/10.5281/zenodo.XXXXXXX)
+[![GitHub Actions Linting Status](https://github.com/nf-core/proteinfold/actions/workflows/linting.yml/badge.svg)](https://github.com/nf-core/proteinfold/actions/workflows/linting.yml)[![AWS CI](https://img.shields.io/badge/CI%20tests-full%20size-FF9900?labelColor=000000&logo=Amazon%20AWS)](https://nf-co.re/proteinfold/results)[![Cite with Zenodo](http://img.shields.io/badge/DOI-10.5281/zenodo.13135393-1073c8?labelColor=000000)](https://doi.org/10.5281/zenodo.13135393)
 [![nf-test](https://img.shields.io/badge/unit_tests-nf--test-337ab7.svg)](https://www.nf-test.com)
 
 [![Nextflow](https://img.shields.io/badge/nextflow%20DSL2-%E2%89%A523.04.0-23aa62.svg)](https://www.nextflow.io/)

modules.json

@@ -29,7 +29,8 @@
                     "multiqc": {
                         "branch": "master",
                         "git_sha": "b7ebe95761cd389603f9cc0e0dc384c0f663815a",
-                        "installed_by": ["modules"]
+                        "installed_by": ["modules"],
+                        "patch": "modules/nf-core/multiqc/multiqc.diff"
                     },
                     "untar": {
                         "branch": "master",

modules/local/colabfold_batch.nf

@@ -7,7 +7,7 @@ process COLABFOLD_BATCH {
         error("Local COLABFOLD_BATCH module does not support Conda. Please use Docker / Singularity / Podman instead.")
     }
 
-    container "nf-core/proteinfold_colabfold:1.1.0"
+    container "nf-core/proteinfold_colabfold:dev"
 
     input:
     tuple val(meta), path(fasta)

modules/local/mmseqs_colabfoldsearch.nf

@@ -7,7 +7,7 @@ process MMSEQS_COLABFOLDSEARCH {
         error("Local MMSEQS_COLABFOLDSEARCH module does not support Conda. Please use Docker / Singularity / Podman instead.")
     }
 
-    container "nf-core/proteinfold_colabfold:1.1.0"
+    container "nf-core/proteinfold_colabfold:dev"
 
     input:
     tuple val(meta), path(fasta)

modules/local/run_alphafold2.nf

@@ -10,7 +10,7 @@ process RUN_ALPHAFOLD2 {
         error("Local RUN_ALPHAFOLD2 module does not support Conda. Please use Docker / Singularity / Podman instead.")
     }
 
-    container "nf-core/proteinfold_alphafold2_standard:1.1.0"
+    container "nf-core/proteinfold_alphafold2_standard:dev"
 
     input:
     tuple val(meta), path(fasta)

modules/local/run_alphafold2_msa.nf

@@ -10,7 +10,7 @@ process RUN_ALPHAFOLD2_MSA {
         error("Local RUN_ALPHAFOLD2_MSA module does not support Conda. Please use Docker / Singularity / Podman instead.")
     }
 
-    container "nf-core/proteinfold_alphafold2_msa:1.1.0"
+    container "nf-core/proteinfold_alphafold2_msa:dev"
 
     input:
     tuple val(meta), path(fasta)

modules/local/run_alphafold2_pred.nf

@@ -10,7 +10,7 @@ process RUN_ALPHAFOLD2_PRED {
         error("Local RUN_ALPHAFOLD2_PRED module does not support Conda. Please use Docker / Singularity / Podman instead.")
     }
 
-    container "nf-core/proteinfold_alphafold2_split:1.1.0"
+    container "nf-core/proteinfold_alphafold2_split:dev"
 
     input:
     tuple val(meta), path(fasta)

modules/local/run_esmfold.nf

@@ -6,7 +6,7 @@ process RUN_ESMFOLD {
         error("Local RUN_ESMFOLD module does not support Conda. Please use Docker / Singularity / Podman instead.")
     }
 
-    container "nf-core/proteinfold_esmfold:1.1.0"
+    container "nf-core/proteinfold_esmfold:dev"
 
     input:
     tuple val(meta), path(fasta)

nextflow.config

@@ -322,7 +322,7 @@ manifest {
     description     = """Protein 3D structure prediction pipeline"""
     mainScript      = 'main.nf'
     nextflowVersion = '!>=23.04.0'
-    version         = '1.2.0dev'
+    version         = '1.1.1'
     doi             = '10.5281/zenodo.7629996'
 }