Changed force-pyramid to process a single file instead of groups of f…

…iles
nf-core · Oct 11, 2024 · 605f154 · 605f154
1 parent 99ff909
commit 605f154
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Showing 2 changed files with 3 additions and 5 deletions.
diff --git a/modules/local/force-pyramid/main.nf b/modules/local/force-pyramid/main.nf
@@ -16,10 +16,8 @@ process FORCE_PYRAMID {
 
     script:
     """
-    files="*.tif"
-    for file in \$files; do
-        force-pyramid \$file
-    done;
+    file="*.tif"
+    force-pyramid \$file
 
     cat <<-END_VERSIONS > versions.yml
     "${task.process}":

diff --git a/subworkflows/local/higher_level.nf b/subworkflows/local/higher_level.nf
@@ -54,7 +54,7 @@ workflow HIGHER_LEVEL {
 
         pyramid_files = Channel.empty()
         if (pyramid_visualization) {
-            FORCE_PYRAMID( trend_files.filter { it[1].name.endsWith('.tif')  }.map { [ it[1].simpleName.substring(0,11), it[1] ] } .groupTuple() )
+            FORCE_PYRAMID( trend_files.filter { it[1].name.endsWith('.tif')  }.map { [ it[1].simpleName.substring(0,11), it[1] ] } )
             pyramid_files = FORCE_PYRAMID.out.trends
             ch_versions = ch_versions.mix(FORCE_PYRAMID.out.versions.first())
         }