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Replace local version of SENTIEON_DATAMETRICS with nf-core version #400

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merged 3 commits into from
Aug 14, 2023
Merged

Replace local version of SENTIEON_DATAMETRICS with nf-core version #400

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719f56e
Replace local version of SENTIEON_DATAMETRICS with nf-core version
asp8200 Aug 14, 2023
ee1206a
Update changelog
asp8200 Aug 14, 2023
7cf3425
Merge branch 'dev' into update_sentieon_datametrics_module
asp8200 Aug 14, 2023
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1 change: 1 addition & 0 deletions CHANGELOG.md
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Expand Up @@ -15,6 +15,7 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
- Installed the nf-core version of the sentieon/bwamemindex module [#397](https://github.com/nf-core/raredisease/pull/397)
- Installed the nf-core version of the sentieon/bwamem module [#398](https://github.com/nf-core/raredisease/pull/398)
- Installed the nf-core version of the sentieon/readwriter module [#399](https://github.com/nf-core/raredisease/pull/399)
- Installed the nf-core version of the sentieon/datametrics module [#400](https://github.com/nf-core/raredisease/pull/400)

### `Fixed`

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5 changes: 5 additions & 0 deletions modules.json
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Expand Up @@ -350,6 +350,11 @@
"git_sha": "b9172e8c26a3db5009f7872654c44587e254f094",
"installed_by": ["modules"]
},
"sentieon/datametrics": {
"branch": "master",
"git_sha": "127edadc279e19da093fdd513926c6cdee82c306",
"installed_by": ["modules"]
},
"sentieon/readwriter": {
"branch": "master",
"git_sha": "b28e4dde755117e8dab5d6e85e292f145b8b53c3",
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29 changes: 24 additions & 5 deletions modules/local/sentieon/datametrics.nf → modules/nf-core/sentieon/datametrics/main.nf
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84 changes: 84 additions & 0 deletions modules/nf-core/sentieon/datametrics/meta.yml
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2 changes: 1 addition & 1 deletion subworkflows/local/alignment/align_sentieon.nf
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Expand Up @@ -3,7 +3,7 @@
//

include { SENTIEON_BWAMEM } from '../../../modules/nf-core/sentieon/bwamem/main'
include { SENTIEON_DATAMETRICS } from '../../../modules/local/sentieon/datametrics'
include { SENTIEON_DATAMETRICS } from '../../../modules/nf-core/sentieon/datametrics/main'
include { SENTIEON_LOCUSCOLLECTOR } from '../../../modules/local/sentieon/locuscollector'
include { SENTIEON_DEDUP } from '../../../modules/local/sentieon/dedup'
include { SENTIEON_BQSR } from '../../../modules/local/sentieon/bqsr'
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