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Hello,
a samples.csv that was working in 3.15.1 is not accepted anymore.
The file has numeric sample ids. Prepending them with x makes it work again.
However numeric sample ids are very common and there is no reason that they should not be valid.
* --input (/users/ido.tamir/work/analysis/rnaseq/ribozero_align_20241017.csv): Validation of file failed:
-> Entry 1: Error for field 'sample' (298098): Sample name must be provided and cannot contain spaces
-> Entry 2: Error for field 'sample' (298504): Sample name must be provided and cannot contain spaces
-> Entry 3: Error for field 'sample' (317960): Sample name must be provided and cannot contain spaces
-> Entry 4: Error for field 'sample' (319093): Sample name must be provided and cannot contain spaces
-> Entry 5: Error for field 'sample' (297292): Sample name must be provided and cannot contain spaces
-> Entry 6: Error for field 'sample' (320543): Sample name must be provided and cannot contain spaces
Description of the bug
Hello,
a samples.csv that was working in 3.15.1 is not accepted anymore.
The file has numeric sample ids. Prepending them with x makes it work again.
However numeric sample ids are very common and there is no reason that they should not be valid.
Command used and terminal output
nextflow run -r 3.16.1 nf-core/rnaseq --input test.csv --genome hg38 --outdir .
Relevant files
test.csv
System information
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