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64 Open 610 Closed
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Issues list

Wrong results without error if saved_trimmed = true bug Something isn't working
#1481 opened Dec 23, 2024 by panzhang666666
working with gene panels or single genes (e.g., NF1) in the nf-core/rnaseq pipeline
#1472 opened Dec 18, 2024 by huma1995
Unify SummarizedExperiment output enhancement
#1465 opened Dec 10, 2024 by grst
1
Immune repertoire reconstruction from bulk RNAseq data enhancement
#1464 opened Dec 6, 2024 by npechl
4
ERROR Not able to pull image of ('biocontainers/bioconductor-tximeta:1.20.1--r43hdfd78af_0') bug Something isn't working
#1457 opened Nov 26, 2024 by yaya-O19
singularity.registry ignored when pulling nf-core/bedtools_coreutils image bug Something isn't working
#1455 opened Nov 21, 2024 by mathob
4
Warn user if both transcript_fasta and additional_fasta are provided. enhancement
#1450 opened Nov 13, 2024 by siddharthab
Sample name changed 3.16 bug Something isn't working
#1449 opened Nov 4, 2024 by fjosefdz
Pipeline prefixes X to samplenames bug Something isn't working
#1446 opened Oct 29, 2024 by RaverJay
1
Error in findColumnWithAllEntries(ids, metadata) : No column contains all vector entries bug Something isn't working
#1445 opened Oct 29, 2024 by RaverJay
2
root filesystem extraction failed: extract command failed: ERROR : Failed to create user namespace: user namespace not supported by your system bug Something isn't working
#1444 opened Oct 29, 2024 by JinchaoChen112
RSeQC module tin.py creates RefseqID instead of ENSEMBLIDs of transcripts bug Something isn't working
#1442 opened Oct 28, 2024 by AnissaE
Remove need for use of Seqera conda channels enhancement
#1431 opened Oct 23, 2024 by pinin4fjords
@pabloaledo
Add ARM support for hisat2 enhancement wontfix This will not be worked on
#1430 opened Oct 23, 2024 by pinin4fjords
Add ARM support for Bracken enhancement
#1429 opened Oct 23, 2024 by pinin4fjords
@pabloaledo
Add ARM support for kraken2 enhancement
#1428 opened Oct 23, 2024 by pinin4fjords
@pabloaledo
strandness error bug Something isn't working
#1420 opened Oct 17, 2024 by aheravi
2
3.16.x does not allow numeric sample ids bug Something isn't working
#1419 opened Oct 17, 2024 by idot
2
Restore the set -C when the concerned modules are fixed
#1404 opened Oct 10, 2024 by maxulysse
Option to keep chimeric reads after UMI deduplication enhancement
#1373 opened Sep 4, 2024 by siddharthab 3.18.0
1
Improve qualimap execution time enhancement
#1356 opened Aug 20, 2024 by PramodRaoB 3.18.0
2
SortMeRNA database version enhancement
#1354 opened Aug 16, 2024 by wzheng0520 3.18.0
3
Sanity-check the sample names before committing to any data processing enhancement
#1349 opened Aug 2, 2024 by fruce-ki
To use STAR module, how should the GTF file look like
#1347 opened Jul 24, 2024 by huma1995
1
Updating picard to 3.2.0 fails pipeline level tests
#1346 opened Jul 22, 2024 by maxulysse
1
2
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