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Running the pipeline with this samplesheet.csv:
samplesheet.csv
sample,fastq_1,fastq_2,strandedness,condition,replicate 1A2,reads/1A2_S4_R1_001.fastq.gz,reads/1A2_S4_R2_001.fastq.gz,auto,1,A2 1B2,reads/1B2_S14_R1_001.fastq.gz,reads/1B2_S14_R2_001.fastq.gz,auto,1,B2 1C1,reads/1C1_S24_R1_001.fastq.gz,reads/1C1_S24_R2_001.fastq.gz,auto,1,C1 5A2,reads/5A2_S7_R1_001.fastq.gz,reads/5A2_S7_R2_001.fastq.gz,auto,5,A2 5B2,reads/5B2_S17_R1_001.fastq.gz,reads/5B2_S17_R2_001.fastq.gz,auto,5,B2 5C1,reads/5C1_S27_R1_001.fastq.gz,reads/5C1_S27_R2_001.fastq.gz,auto,5,C1
yielded these tables:
salmon.merged.gene_counts.tsv
gene_id gene_name X1A2 X1B2 X1C1 X5A2 X5B2 X5C1 16Sa 16Sa 11039.388 14.242 0 0 0 0 16Sb 16Sb 19419.287 13587.814 9855.454 330.904 4258.272 924.453 ...
Why were samples renamed?
Cheers
No response
The text was updated successfully, but these errors were encountered:
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Description of the bug
Running the pipeline with this
samplesheet.csv
:yielded these tables:
salmon.merged.gene_counts.tsv
Why were samples renamed?
Cheers
Command used and terminal output
No response
Relevant files
No response
System information
No response
The text was updated successfully, but these errors were encountered: