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Fix schema validation for spaceranger reference #73

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merged 3 commits into from
Apr 12, 2024
Merged

Fix schema validation for spaceranger reference #73

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e2c05d1
Fix schema validation for spaceranger reference
grst Mar 21, 2024
dbca699
Update nextflow_schema.json
grst Mar 21, 2024
2338ae9
Merge branch 'dev' into grst-patch-1
fasterius Apr 12, 2024
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8 changes: 5 additions & 3 deletions nextflow_schema.json
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Original file line number Diff line number Diff line change
Expand Up @@ -56,15 +56,17 @@
"mimetype": "text/csv",
"pattern": "^\\S+\\.csv$",
"description": "Location of Space Ranger probeset file.",
"fa_icon": "fas fa-file-csv"
"fa_icon": "fas fa-file-csv",
"exists": true
},
"spaceranger_reference": {
"type": "string",
"format": "file-path",
"format": "path",
"description": "Location of Space Ranger reference directory. May be packed as `tar.gz` file.",
"help_text": "Please see the [10x website](https://support.10xgenomics.com/spatial-gene-expression/software/downloads/latest) to download either of the supported human or mouse references. If not specified the GRCh38 human reference is automatically downladed and used.",
"fa_icon": "fas fa-folder-open",
"default": "https://cf.10xgenomics.com/supp/spatial-exp/refdata-gex-GRCh38-2020-A.tar.gz"
"default": "https://cf.10xgenomics.com/supp/spatial-exp/refdata-gex-GRCh38-2020-A.tar.gz",
"exists": true
}
}
},
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