Installing
- Download the source code zip file and unzip it.
- Follow the setup instructions.
Release Notes
Detailed documentation is available on the package website.
Added
- XTRegisterSameChannel: Registration of 2D or 3D images that share a common channel (correlation based affine alignment). Sample datasets are freely available on zenodo . A video illustrating the usage of the extension is available on YouTube.
- XTChannelArithmetic: Perform channel arithmetic, and more advanced channel manipulations via short SimpleITK expressions (short SimpleITK programs).
- XTVirtualHEStain: Create a virtual H&E stain from a fluoresence image and add the RGB image as three new channels to the original image.
- XTConfigureChannelSettings: Configure channel settings, name, description and visualization configuration specified via a csv file or an Imaris file.
- XTExportChannelSettings: Export channel settings, name, description and visualization configuration to a csv file. The resulting csv file can be easily edited and then applied to other imaris files using the XTConfigureChannelSettings extension.