Bump actions/setup-python from 4 to 5 #163
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: Python Test and Package | |
| on: | |
| push: | |
| branches: | |
| - main | |
| tags: | |
| - 'v*' | |
| pull_request: | |
| branches: | |
| - main | |
| jobs: | |
| linting: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: | |
| fetch-depth: 0 | |
| - name: Set up Python 3.11 | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: 3.11 | |
| cache: 'pip' | |
| - name: Linting with pre-commit | |
| run: | | |
| python -m pip install pre-commit | |
| pre-commit run --all-files | |
| test: | |
| needs: linting | |
| runs-on: ubuntu-latest | |
| strategy: | |
| matrix: | |
| python-version: [3.8, 3.11] | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: | |
| fetch-depth: 0 | |
| - name: Create LFS file list | |
| run: | | |
| git lfs ls-files -l | cut -d' ' -f1 | sort > .lfs-assets-id | |
| - name: Restore LFS cache | |
| uses: actions/cache@v3 | |
| id: lfs-cache | |
| with: | |
| path: .git/lfs | |
| key: lfs-v1-${{ hashFiles('.lfs-assets-id') }} | |
| restore-keys: | |
| lfs-v1- | |
| - name: Git LFS Pull | |
| run: | | |
| git lfs pull | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install dependencies | |
| run: | | |
| python -m pip install --upgrade pip | |
| pip install -e .[dev,sitkCore] | |
| env: | |
| PIP_EXTRA_INDEX_URL: https://${{secrets.ARTIFACTORY_RO_USER}}:${{secrets.ARTIFACTORY_RO_TOKEN}}@artifactory.niaid.nih.gov/artifactory/api/pypi/bcbb-pypi/simple | |
| - name: Test with pytest | |
| run: | | |
| python -m pytest | |
| package: | |
| needs: test | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: | |
| fetch-depth: 0 | |
| - name: Create LFS file list | |
| run: | | |
| git lfs ls-files -l | cut -d' ' -f1 | sort > .lfs-assets-id | |
| - name: Restore LFS cache | |
| uses: actions/cache@v3 | |
| id: lfs-cache | |
| with: | |
| path: .git/lfs | |
| key: lfs-v1-${{ hashFiles('.lfs-assets-id') }} | |
| restore-keys: | | |
| lfs-v1- | |
| - name: Git LFS Pull | |
| run: | | |
| git lfs pull | |
| - name: Set up Python 3.9 | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: 3.9 | |
| - name: Build package | |
| run: | | |
| python -m pip install twine build | |
| python -m build --wheel --sdist | |
| python -m twine check dist/* | |
| ls -la dist | |
| - name: Upload package | |
| if: github.event_name == 'push' | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: python-packages | |
| path: dist | |
| publish_release: | |
| if: startsWith(github.ref, 'refs/tags/v') | |
| needs: package | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/download-artifact@v3 | |
| id: download | |
| with: | |
| name: python-packages | |
| - name: Extract Python Packages | |
| id: files | |
| run: | | |
| cd ${{steps.download.outputs.download-path}} | |
| - name: Create Release and Upload | |
| id: create_release | |
| env: | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| run: | | |
| gh release create ${{ github.ref_name }} --repo ${{ github.repository }} --verify-tag --generate-notes --title "Release ${{ github.ref_name }}" | |
| gh release upload ${{ github.ref_name }} --repo ${{ github.repository }} ${{steps.download.outputs.download-path}}/* | |
| - name: bcbb-pypi upload | |
| run: | | |
| python -m pip install twine | |
| python -m twine check ${{steps.download.outputs.download-path}}/* | |
| python -m twine upload ${{steps.download.outputs.download-path}}/* | |
| env: | |
| TWINE_REPOSITORY_URL: https://artifactory.niaid.nih.gov/artifactory/api/pypi/bcbb-pypi | |
| TWINE_PASSWORD: ${{secrets.BCBB_PYPI_PASSWORD}} | |
| TWINE_USERNAME: ${{secrets.BCBB_PYPI_USERNAME}} |