CircleCI update of dev docs (build: 14577).

nilearn · Mar 3, 2024 · 216ccae · 216ccae
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diff --git a/dev/.buildinfo b/dev/.buildinfo
@@ -1,4 +1,4 @@
 # Sphinx build info version 1
 # This file hashes the configuration used when building these files. When it is not found, a full rebuild will be done.
-config: 10b342de1865c528eca8561e57f39aeb
+config: 6b071d35a551189258545d6dfea74423
 tags: 645f666f9bcd5a90fca523b33c5a78b7
diff --git a/dev/_downloads/07fcc19ba03226cd3d83d4e40ec44385/auto_examples_python.zip b/dev/_downloads/07fcc19ba03226cd3d83d4e40ec44385/auto_examples_python.zip
diff --git a/dev/_downloads/6f1e7a639e0699d6164445b55e6c116d/auto_examples_jupyter.zip b/dev/_downloads/6f1e7a639e0699d6164445b55e6c116d/auto_examples_jupyter.zip
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diff --git a/dev/_images/sphx_glr_plot_second_level_association_test_003.png b/dev/_images/sphx_glr_plot_second_level_association_test_003.png
diff --git a/dev/_images/sphx_glr_plot_second_level_one_sample_test_003.png b/dev/_images/sphx_glr_plot_second_level_one_sample_test_003.png
diff --git a/dev/_images/sphx_glr_plot_simulated_data_003.png b/dev/_images/sphx_glr_plot_simulated_data_003.png
diff --git a/dev/_images/sphx_glr_plot_simulated_data_004.png b/dev/_images/sphx_glr_plot_simulated_data_004.png
diff --git a/dev/_images/sphx_glr_plot_simulated_data_006.png b/dev/_images/sphx_glr_plot_simulated_data_006.png
diff --git a/dev/_sources/auto_examples/00_tutorials/plot_3d_and_4d_niimg.rst.txt b/dev/_sources/auto_examples/00_tutorials/plot_3d_and_4d_niimg.rst.txt
@@ -74,6 +74,9 @@ from a :term:`Neurovault` repository
  .. code-block:: none
 
 
+    Dataset created in /home/runner/work/nilearn/nilearn/nilearn_data/neurovault
+
+
     ['/home/runner/work/nilearn/nilearn/nilearn_data/neurovault/collection_658/image_10426.nii.gz']
 
 
@@ -126,7 +129,7 @@ statistical map:
  .. code-block:: none
 
 
-    <nilearn.plotting.displays._slicers.OrthoSlicer object at 0x7f3ae41a9ee0>
+    <nilearn.plotting.displays._slicers.OrthoSlicer object at 0x7f30baf53c20>
 
 
 
@@ -155,7 +158,7 @@ Visualizing works better with a threshold
  .. code-block:: none
 
 
-    <nilearn.plotting.displays._slicers.OrthoSlicer object at 0x7f3ac7e2b500>
+    <nilearn.plotting.displays._slicers.OrthoSlicer object at 0x7f30b8074c20>
 
 
 
@@ -183,6 +186,11 @@ correspondence between rest and task
  .. code-block:: none
 
 
+    Dataset created in /home/runner/work/nilearn/nilearn/nilearn_data/smith_2009
+
+    Downloading data from https://www.fmrib.ox.ac.uk/datasets/brainmap+rsns/PNAS_Smith09_rsn10.nii.gz ...
+    Downloaded 1531904 of 7565016 bytes (20.2%,    4.1s remaining) ...done. (2 seconds, 0 min)
+
     '/home/runner/work/nilearn/nilearn/nilearn_data/smith_2009/PNAS_Smith09_rsn10.nii.gz'
 
 
@@ -264,7 +272,7 @@ We can then plot it
  .. code-block:: none
 
 
-    <nilearn.plotting.displays._slicers.OrthoSlicer object at 0x7f3ac7cad0a0>
+    <nilearn.plotting.displays._slicers.OrthoSlicer object at 0x7f30b7f25040>
 
 
 
@@ -475,9 +483,9 @@ image.
 
 .. rst-class:: sphx-glr-timing
 
-   **Total running time of the script:** (0 minutes 17.386 seconds)
+   **Total running time of the script:** (0 minutes 20.871 seconds)
 
-**Estimated memory usage:**  213 MB
+**Estimated memory usage:**  215 MB
 
 
 .. _sphx_glr_download_auto_examples_00_tutorials_plot_3d_and_4d_niimg.py:

diff --git a/dev/_sources/auto_examples/00_tutorials/plot_decoding_tutorial.rst.txt b/dev/_sources/auto_examples/00_tutorials/plot_decoding_tutorial.rst.txt
diff --git a/dev/_sources/auto_examples/00_tutorials/plot_nilearn_101.rst.txt b/dev/_sources/auto_examples/00_tutorials/plot_nilearn_101.rst.txt
@@ -77,7 +77,7 @@ Let's quickly plot this file:
  .. code-block:: none
 
 
-    <nilearn.plotting.displays._slicers.OrthoSlicer object at 0x7f3ac7d0dee0>
+    <nilearn.plotting.displays._slicers.OrthoSlicer object at 0x7f30b288e2d0>
 
 
 
@@ -125,7 +125,7 @@ Here we give as inputs the image filename and the smoothing value in mm
  .. code-block:: none
 
 
-    <nibabel.nifti1.Nifti1Image object at 0x7f3ad4247650>
+    <nibabel.nifti1.Nifti1Image object at 0x7f30b269fd70>
 
 
 
@@ -154,7 +154,7 @@ instance to look at it
  .. code-block:: none
 
 
-    <nilearn.plotting.displays._slicers.OrthoSlicer object at 0x7f3ad8873770>
+    <nilearn.plotting.displays._slicers.OrthoSlicer object at 0x7f30b7ed3350>
 
 
 
@@ -183,7 +183,7 @@ We could also pass it to the smoothing function
  .. code-block:: none
 
 
-    <nilearn.plotting.displays._slicers.OrthoSlicer object at 0x7f3ad89aa6c0>
+    <nilearn.plotting.displays._slicers.OrthoSlicer object at 0x7f30b28bb9b0>
 
 
 
@@ -249,7 +249,7 @@ passed on to other nilearn tools, or saved to disk.
 
 .. rst-class:: sphx-glr-timing
 
-   **Total running time of the script:** (0 minutes 3.961 seconds)
+   **Total running time of the script:** (0 minutes 3.923 seconds)
 
 **Estimated memory usage:**  177 MB
 

diff --git a/dev/_sources/auto_examples/00_tutorials/plot_python_101.rst.txt b/dev/_sources/auto_examples/00_tutorials/plot_python_101.rst.txt
@@ -67,14 +67,14 @@ A simple example of basic Python numerics and how to plot it.
  .. code-block:: none
 
 
-    [<matplotlib.lines.Line2D object at 0x7f3acae8f950>]
+    [<matplotlib.lines.Line2D object at 0x7f30bb408380>]
 
 
 
 
 .. rst-class:: sphx-glr-timing
 
-   **Total running time of the script:** (0 minutes 0.234 seconds)
+   **Total running time of the script:** (0 minutes 0.231 seconds)
 
 **Estimated memory usage:**  10 MB
 

diff --git a/dev/_sources/auto_examples/00_tutorials/plot_single_subject_single_run.rst.txt b/dev/_sources/auto_examples/00_tutorials/plot_single_subject_single_run.rst.txt
@@ -81,6 +81,13 @@ Retrieving the data
 
  .. code-block:: none
 
+
+    Dataset created in /home/runner/work/nilearn/nilearn/nilearn_data/spm_auditory
+
+    Data absent, downloading...
+    Downloading data from https://www.fil.ion.ucl.ac.uk/spm/download/data/MoAEpilot/MoAEpilot.zip ...
+    Downloaded 778240 of 34212021 bytes (2.3%,   43.9s remaining)    Downloaded 1859584 of 34212021 bytes (5.4%,   35.5s remaining)    Downloaded 2670592 of 34212021 bytes (7.8%,   37.9s remaining)    Downloaded 3342336 of 34212021 bytes (9.8%,   39.1s remaining)    Downloaded 3735552 of 34212021 bytes (10.9%,   42.9s remaining)    Downloaded 4055040 of 34212021 bytes (11.9%,   46.7s remaining)    Downloaded 4259840 of 34212021 bytes (12.5%,   51.3s remaining)    Downloaded 4489216 of 34212021 bytes (13.1%,   55.1s remaining)    Downloaded 4751360 of 34212021 bytes (13.9%,   57.9s remaining)    Downloaded 5038080 of 34212021 bytes (14.7%,   60.0s remaining)    Downloaded 5357568 of 34212021 bytes (15.7%,  1.0min remaining)    Downloaded 5709824 of 34212021 bytes (16.7%,  1.0min remaining)    Downloaded 6209536 of 34212021 bytes (18.2%,  1.0min remaining)    Downloaded 6676480 of 34212021 bytes (19.5%,   59.5s remaining)    Downloaded 7102464 of 34212021 bytes (20.8%,   59.0s 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33570816 of 34212021 bytes (98.1%,    1.7s remaining)    Downloaded 33890304 of 34212021 bytes (99.1%,    0.9s remaining) ...done. (95 seconds, 1 min)
+    Extracting data from /home/runner/work/nilearn/nilearn/nilearn_data/spm_auditory/sub001/MoAEpilot.zip..... done.
     /home/runner/work/nilearn/nilearn/nilearn_data/spm_auditory/sub001/fM00223/fM00223_004.img
     /home/runner/work/nilearn/nilearn/nilearn_data/spm_auditory/sub001/fM00223/fM00223_005.img
     /home/runner/work/nilearn/nilearn/nilearn_data/spm_auditory/sub001/fM00223/fM00223_006.img
@@ -129,7 +136,7 @@ We can display the first functional image and the subject's anatomy:
  .. code-block:: none
 
 
-    <nilearn.plotting.displays._slicers.OrthoSlicer object at 0x7f3ad8a926c0>
+    <nilearn.plotting.displays._slicers.OrthoSlicer object at 0x7f30b7dec8f0>
 
 
 
@@ -1264,9 +1271,9 @@ Oops, there is a lot of non-neural signal in there (ventricles, arteries)...
 
 .. rst-class:: sphx-glr-timing
 
-   **Total running time of the script:** (0 minutes 15.619 seconds)
+   **Total running time of the script:** (1 minutes 51.779 seconds)
 
-**Estimated memory usage:**  274 MB
+**Estimated memory usage:**  269 MB
 
 
 .. _sphx_glr_download_auto_examples_00_tutorials_plot_single_subject_single_run.py:

diff --git a/dev/_sources/auto_examples/00_tutorials/sg_execution_times.rst.txt b/dev/_sources/auto_examples/00_tutorials/sg_execution_times.rst.txt
@@ -6,7 +6,7 @@
 
 Computation times
 =================
-**01:13.700** total execution time for 5 files **from auto_examples/00_tutorials**:
+**03:04.669** total execution time for 5 files **from auto_examples/00_tutorials**:
 
 .. container::
 
@@ -32,18 +32,18 @@ Computation times
    * - Example
      - Time
      - Mem (MB)
+   * - :ref:`sphx_glr_auto_examples_00_tutorials_plot_single_subject_single_run.py` (``plot_single_subject_single_run.py``)
+     - 01:51.779
+     - 269.5
    * - :ref:`sphx_glr_auto_examples_00_tutorials_plot_decoding_tutorial.py` (``plot_decoding_tutorial.py``)
-     - 00:36.501
-     - 916.8
+     - 00:47.866
+     - 916.9
    * - :ref:`sphx_glr_auto_examples_00_tutorials_plot_3d_and_4d_niimg.py` (``plot_3d_and_4d_niimg.py``)
-     - 00:17.386
-     - 213.1
-   * - :ref:`sphx_glr_auto_examples_00_tutorials_plot_single_subject_single_run.py` (``plot_single_subject_single_run.py``)
-     - 00:15.619
-     - 274.0
+     - 00:20.871
+     - 215.4
    * - :ref:`sphx_glr_auto_examples_00_tutorials_plot_nilearn_101.py` (``plot_nilearn_101.py``)
-     - 00:03.961
+     - 00:03.923
      - 176.6
    * - :ref:`sphx_glr_auto_examples_00_tutorials_plot_python_101.py` (``plot_python_101.py``)
-     - 00:00.234
-     - 9.8
+     - 00:00.231
+     - 9.9
diff --git a/dev/_sources/auto_examples/01_plotting/plot_3d_map_to_surface_projection.rst.txt b/dev/_sources/auto_examples/01_plotting/plot_3d_map_to_surface_projection.rst.txt
diff --git a/dev/_sources/auto_examples/01_plotting/plot_atlas.rst.txt b/dev/_sources/auto_examples/01_plotting/plot_atlas.rst.txt
@@ -52,6 +52,15 @@ Retrieving the atlas data
 
  .. code-block:: none
 
+
+    Dataset created in /home/runner/work/nilearn/nilearn/nilearn_data/fsl
+
+    Downloading data from https://www.nitrc.org/frs/download.php/9902/HarvardOxford.tgz ...
+    Downloaded 12673024 of 25716861 bytes (49.3%,    1.0s remaining) ...done. (2 seconds, 0 min)
+    Extracting data from /home/runner/work/nilearn/nilearn/nilearn_data/fsl/c4d84bbdf5c3325f23e304cdea1e9706/HarvardOxford.tgz..... done.
+    Downloading data from https://www.nitrc.org/frs/download.php/12096/Juelich.tgz ...
+     ...done. (1 seconds, 0 min)
+    Extracting data from /home/runner/work/nilearn/nilearn/nilearn_data/fsl/ab1b53038e13028e55f691a69003c208/Juelich.tgz..... done.
     Atlas ROIs are located at: /home/runner/work/nilearn/nilearn/nilearn_data/fsl/data/atlases/HarvardOxford/HarvardOxford-cort-maxprob-thr25-2mm.nii.gz
     Atlas ROIs are located at: /home/runner/work/nilearn/nilearn/nilearn_data/fsl/data/atlases/Juelich/Juelich-maxprob-thr0-1mm.nii.gz
 
@@ -86,7 +95,7 @@ Visualizing the Harvard-Oxford atlas
  .. code-block:: none
 
 
-    <nilearn.plotting.displays._slicers.OrthoSlicer object at 0x7f3ad87170e0>
+    <nilearn.plotting.displays._slicers.OrthoSlicer object at 0x7f30b3e0ad50>
 
 
 
@@ -116,7 +125,7 @@ Visualizing the Juelich atlas
  .. code-block:: none
 
 
-    <nilearn.plotting.displays._slicers.OrthoSlicer object at 0x7f3ad883f050>
+    <nilearn.plotting.displays._slicers.OrthoSlicer object at 0x7f30b263e630>
 
 
 
@@ -184,9 +193,9 @@ Visualizing the Juelich atlas with contours
 
 .. rst-class:: sphx-glr-timing
 
-   **Total running time of the script:** (0 minutes 57.665 seconds)
+   **Total running time of the script:** (1 minutes 1.113 seconds)
 
-**Estimated memory usage:**  436 MB
+**Estimated memory usage:**  440 MB
 
 
 .. _sphx_glr_download_auto_examples_01_plotting_plot_atlas.py:

diff --git a/dev/_sources/auto_examples/01_plotting/plot_carpet.rst.txt b/dev/_sources/auto_examples/01_plotting/plot_carpet.rst.txt
@@ -206,9 +206,9 @@ Visualizing global patterns, separated by tissue type
 
 .. rst-class:: sphx-glr-timing
 
-   **Total running time of the script:** (0 minutes 6.160 seconds)
+   **Total running time of the script:** (0 minutes 6.006 seconds)
 
-**Estimated memory usage:**  957 MB
+**Estimated memory usage:**  1032 MB
 
 
 .. _sphx_glr_download_auto_examples_01_plotting_plot_carpet.py:

diff --git a/dev/_sources/auto_examples/01_plotting/plot_colormaps.rst.txt b/dev/_sources/auto_examples/01_plotting/plot_colormaps.rst.txt
@@ -113,7 +113,7 @@ Plot matplotlib color maps
 
 .. rst-class:: sphx-glr-timing
 
-   **Total running time of the script:** (0 minutes 2.935 seconds)
+   **Total running time of the script:** (0 minutes 2.894 seconds)
 
 **Estimated memory usage:**  18 MB
 

diff --git a/dev/_sources/auto_examples/01_plotting/plot_demo_glass_brain.rst.txt b/dev/_sources/auto_examples/01_plotting/plot_demo_glass_brain.rst.txt
@@ -72,7 +72,7 @@ Glass brain plotting: whole brain sagittal cuts
  .. code-block:: none
 
 
-    <nilearn.plotting.displays._projectors.OrthoProjector object at 0x7f3ac7ce3bf0>
+    <nilearn.plotting.displays._projectors.OrthoProjector object at 0x7f30b26cd6d0>
 
 
 
@@ -109,7 +109,7 @@ the z view (option "display_mode").
  .. code-block:: none
 
 
-    <nilearn.plotting.displays._projectors.XZProjector object at 0x7f3ac7e2a840>
+    <nilearn.plotting.displays._projectors.XZProjector object at 0x7f30b7e1b650>
 
 
 
@@ -146,7 +146,7 @@ Glass brain plotting: Hemispheric sagittal cuts
 
 .. rst-class:: sphx-glr-timing
 
-   **Total running time of the script:** (0 minutes 3.342 seconds)
+   **Total running time of the script:** (0 minutes 3.240 seconds)
 
 **Estimated memory usage:**  15 MB
 

diff --git a/dev/_sources/auto_examples/01_plotting/plot_demo_glass_brain_extensive.rst.txt b/dev/_sources/auto_examples/01_plotting/plot_demo_glass_brain_extensive.rst.txt
@@ -104,7 +104,7 @@ a :class:`~nilearn.plotting.displays.OrthoProjector` is returned.
  .. code-block:: none
 
 
-    <nilearn.plotting.displays._projectors.OrthoProjector object at 0x7f3ad7f3b500>
+    <nilearn.plotting.displays._projectors.OrthoProjector object at 0x7f30b27a80e0>
 
 
 
@@ -135,7 +135,7 @@ setting ``colorbar=True``.
  .. code-block:: none
 
 
-    <nilearn.plotting.displays._projectors.OrthoProjector object at 0x7f3ad8a65550>
+    <nilearn.plotting.displays._projectors.OrthoProjector object at 0x7f30b7d7a870>
 
 
 
@@ -173,7 +173,7 @@ axial projections by setting ``display_mode='xz'``, which returns a
  .. code-block:: none
 
 
-    <nilearn.plotting.displays._projectors.XZProjector object at 0x7f3ad82bb650>
+    <nilearn.plotting.displays._projectors.XZProjector object at 0x7f30b27dac30>
 
 
 
@@ -208,7 +208,7 @@ Additionally, we only visualize coronal and axial projections by setting
  .. code-block:: none
 
 
-    <nilearn.plotting.displays._projectors.YZProjector object at 0x7f3ad854b2c0>
+    <nilearn.plotting.displays._projectors.YZProjector object at 0x7f30b251d7c0>
 
 
 
@@ -240,7 +240,7 @@ Setting ``plot_abs=True`` and ``display_mode='yx'`` (returns a
  .. code-block:: none
 
 
-    <nilearn.plotting.displays._projectors.YXProjector object at 0x7f3ab9603500>
+    <nilearn.plotting.displays._projectors.YXProjector object at 0x7f30bb187aa0>
 
 
 
@@ -282,7 +282,7 @@ colorbar will not be centered around zero.
  .. code-block:: none
 
 
-    <nilearn.plotting.displays._projectors.YZProjector object at 0x7f3ad8abe6c0>
+    <nilearn.plotting.displays._projectors.YZProjector object at 0x7f30b3c70260>
 
 
 
@@ -321,7 +321,7 @@ losing colours due to the thresholding.
  .. code-block:: none
 
 
-    <nilearn.plotting.displays._projectors.YZProjector object at 0x7f3acafa7e00>
+    <nilearn.plotting.displays._projectors.YZProjector object at 0x7f30b66aa870>
 
 
 
@@ -365,7 +365,7 @@ enables an hemispheric sagittal view. The display object returned is then a
  .. code-block:: none
 
 
-    <nilearn.plotting.displays._projectors.LZRProjector object at 0x7f3ac5559e80>
+    <nilearn.plotting.displays._projectors.LZRProjector object at 0x7f30b2775640>
 
 
 
@@ -403,7 +403,7 @@ enables an hemispheric sagittal view. The display object returned is then a
  .. code-block:: none
 
 
-    <nilearn.plotting.displays._projectors.LYRZProjector object at 0x7f3ad4190260>
+    <nilearn.plotting.displays._projectors.LYRZProjector object at 0x7f30bb22bda0>
 
 
 
@@ -446,7 +446,7 @@ If you are only interested in single projections, you can set
  .. code-block:: none
 
 
-    <nilearn.plotting.displays._projectors.XProjector object at 0x7f3ad81a9970>
+    <nilearn.plotting.displays._projectors.XProjector object at 0x7f30b79e5340>
 
 
 
@@ -830,7 +830,7 @@ Next, using the same display object, we plot positive sign of activation.
 
 .. rst-class:: sphx-glr-timing
 
-   **Total running time of the script:** (0 minutes 26.267 seconds)
+   **Total running time of the script:** (0 minutes 26.415 seconds)
 
 **Estimated memory usage:**  9 MB