CircleCI update of dev docs (build: 14537).

nilearn · Feb 26, 2024 · aef228a · aef228a
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diff --git a/dev/.buildinfo b/dev/.buildinfo
@@ -1,4 +1,4 @@
 # Sphinx build info version 1
 # This file hashes the configuration used when building these files. When it is not found, a full rebuild will be done.
-config: 536979c79997a64bb7550fa11411abc5
+config: a759caff04bfb543f86e91f090479ddd
 tags: 645f666f9bcd5a90fca523b33c5a78b7
diff --git a/dev/_downloads/07fcc19ba03226cd3d83d4e40ec44385/auto_examples_python.zip b/dev/_downloads/07fcc19ba03226cd3d83d4e40ec44385/auto_examples_python.zip
diff --git a/dev/_downloads/6f1e7a639e0699d6164445b55e6c116d/auto_examples_jupyter.zip b/dev/_downloads/6f1e7a639e0699d6164445b55e6c116d/auto_examples_jupyter.zip
diff --git a/dev/_images/sphx_glr_plot_advanced_decoding_scikit_001.png b/dev/_images/sphx_glr_plot_advanced_decoding_scikit_001.png
diff --git a/dev/_images/sphx_glr_plot_advanced_decoding_scikit_thumb.png b/dev/_images/sphx_glr_plot_advanced_decoding_scikit_thumb.png
diff --git a/dev/_images/sphx_glr_plot_bids_analysis_001.png b/dev/_images/sphx_glr_plot_bids_analysis_001.png
diff --git a/dev/_images/sphx_glr_plot_bids_analysis_thumb.png b/dev/_images/sphx_glr_plot_bids_analysis_thumb.png
diff --git a/dev/_images/sphx_glr_plot_design_matrix_001.png b/dev/_images/sphx_glr_plot_design_matrix_001.png
diff --git a/dev/_images/sphx_glr_plot_design_matrix_thumb.png b/dev/_images/sphx_glr_plot_design_matrix_thumb.png
diff --git a/dev/_images/sphx_glr_plot_first_level_details_024.png b/dev/_images/sphx_glr_plot_first_level_details_024.png
diff --git a/dev/_images/sphx_glr_plot_haxby_anova_svm_001.png b/dev/_images/sphx_glr_plot_haxby_anova_svm_001.png
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diff --git a/dev/_images/sphx_glr_plot_haxby_different_estimators_001.png b/dev/_images/sphx_glr_plot_haxby_different_estimators_001.png
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diff --git a/dev/_images/sphx_glr_plot_haxby_mass_univariate_002.png b/dev/_images/sphx_glr_plot_haxby_mass_univariate_002.png
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diff --git a/dev/_images/sphx_glr_plot_localizer_mass_univariate_methods_001.png b/dev/_images/sphx_glr_plot_localizer_mass_univariate_methods_001.png
diff --git a/dev/_images/sphx_glr_plot_localizer_mass_univariate_methods_thumb.png b/dev/_images/sphx_glr_plot_localizer_mass_univariate_methods_thumb.png
diff --git a/dev/_images/sphx_glr_plot_oasis_vbm_004.png b/dev/_images/sphx_glr_plot_oasis_vbm_004.png
diff --git a/dev/_images/sphx_glr_plot_second_level_association_test_003.png b/dev/_images/sphx_glr_plot_second_level_association_test_003.png
diff --git a/dev/_images/sphx_glr_plot_second_level_one_sample_test_003.png b/dev/_images/sphx_glr_plot_second_level_one_sample_test_003.png
diff --git a/dev/_images/sphx_glr_plot_simulated_data_003.png b/dev/_images/sphx_glr_plot_simulated_data_003.png
diff --git a/dev/_images/sphx_glr_plot_simulated_data_004.png b/dev/_images/sphx_glr_plot_simulated_data_004.png
diff --git a/dev/_images/sphx_glr_plot_simulated_data_006.png b/dev/_images/sphx_glr_plot_simulated_data_006.png
diff --git a/dev/_sources/auto_examples/00_tutorials/plot_3d_and_4d_niimg.rst.txt b/dev/_sources/auto_examples/00_tutorials/plot_3d_and_4d_niimg.rst.txt
@@ -126,7 +126,7 @@ statistical map:
  .. code-block:: none
 
 
-    <nilearn.plotting.displays._slicers.OrthoSlicer object at 0x7f005c151730>
+    <nilearn.plotting.displays._slicers.OrthoSlicer object at 0x7fe8948059a0>
 
 
 
@@ -155,7 +155,7 @@ Visualizing works better with a threshold
  .. code-block:: none
 
 
-    <nilearn.plotting.displays._slicers.OrthoSlicer object at 0x7f0057add460>
+    <nilearn.plotting.displays._slicers.OrthoSlicer object at 0x7fe88b803b00>
 
 
 
@@ -264,7 +264,7 @@ We can then plot it
  .. code-block:: none
 
 
-    <nilearn.plotting.displays._slicers.OrthoSlicer object at 0x7f005c2dc4d0>
+    <nilearn.plotting.displays._slicers.OrthoSlicer object at 0x7fe88b7cd310>
 
 
 
@@ -475,7 +475,7 @@ image.
 
 .. rst-class:: sphx-glr-timing
 
-   **Total running time of the script:** (0 minutes 14.593 seconds)
+   **Total running time of the script:** (0 minutes 16.436 seconds)
 
 **Estimated memory usage:**  217 MB
 

diff --git a/dev/_sources/auto_examples/00_tutorials/plot_decoding_tutorial.rst.txt b/dev/_sources/auto_examples/00_tutorials/plot_decoding_tutorial.rst.txt
diff --git a/dev/_sources/auto_examples/00_tutorials/plot_nilearn_101.rst.txt b/dev/_sources/auto_examples/00_tutorials/plot_nilearn_101.rst.txt
@@ -77,7 +77,7 @@ Let's quickly plot this file:
  .. code-block:: none
 
 
-    <nilearn.plotting.displays._slicers.OrthoSlicer object at 0x7f006bd4f620>
+    <nilearn.plotting.displays._slicers.OrthoSlicer object at 0x7fe899341a60>
 
 
 
@@ -125,7 +125,7 @@ Here we give as inputs the image filename and the smoothing value in mm
  .. code-block:: none
 
 
-    <nibabel.nifti1.Nifti1Image object at 0x7f005db01cd0>
+    <nibabel.nifti1.Nifti1Image object at 0x7fe899377bf0>
 
 
 
@@ -154,7 +154,7 @@ instance to look at it
  .. code-block:: none
 
 
-    <nilearn.plotting.displays._slicers.OrthoSlicer object at 0x7f0057004830>
+    <nilearn.plotting.displays._slicers.OrthoSlicer object at 0x7fe8993742c0>
 
 
 
@@ -183,7 +183,7 @@ We could also pass it to the smoothing function
  .. code-block:: none
 
 
-    <nilearn.plotting.displays._slicers.OrthoSlicer object at 0x7f006bd4ff50>
+    <nilearn.plotting.displays._slicers.OrthoSlicer object at 0x7fe88b675ca0>
 
 
 
@@ -249,9 +249,9 @@ passed on to other nilearn tools, or saved to disk.
 
 .. rst-class:: sphx-glr-timing
 
-   **Total running time of the script:** (0 minutes 4.021 seconds)
+   **Total running time of the script:** (0 minutes 4.145 seconds)
 
-**Estimated memory usage:**  199 MB
+**Estimated memory usage:**  175 MB
 
 
 .. _sphx_glr_download_auto_examples_00_tutorials_plot_nilearn_101.py:

diff --git a/dev/_sources/auto_examples/00_tutorials/plot_python_101.rst.txt b/dev/_sources/auto_examples/00_tutorials/plot_python_101.rst.txt
@@ -67,14 +67,14 @@ A simple example of basic Python numerics and how to plot it.
  .. code-block:: none
 
 
-    [<matplotlib.lines.Line2D object at 0x7f005d175400>]
+    [<matplotlib.lines.Line2D object at 0x7fe88a605a30>]
 
 
 
 
 .. rst-class:: sphx-glr-timing
 
-   **Total running time of the script:** (0 minutes 0.238 seconds)
+   **Total running time of the script:** (0 minutes 0.254 seconds)
 
 **Estimated memory usage:**  10 MB
 

diff --git a/dev/_sources/auto_examples/00_tutorials/plot_single_subject_single_run.rst.txt b/dev/_sources/auto_examples/00_tutorials/plot_single_subject_single_run.rst.txt
@@ -129,7 +129,7 @@ We can display the first functional image and the subject's anatomy:
  .. code-block:: none
 
 
-    <nilearn.plotting.displays._slicers.OrthoSlicer object at 0x7f006bd4fc80>
+    <nilearn.plotting.displays._slicers.OrthoSlicer object at 0x7fe899101b50>
 
 
 
@@ -1264,9 +1264,9 @@ Oops, there is a lot of non-neural signal in there (ventricles, arteries)...
 
 .. rst-class:: sphx-glr-timing
 
-   **Total running time of the script:** (0 minutes 15.634 seconds)
+   **Total running time of the script:** (0 minutes 16.867 seconds)
 
-**Estimated memory usage:**  277 MB
+**Estimated memory usage:**  278 MB
 
 
 .. _sphx_glr_download_auto_examples_00_tutorials_plot_single_subject_single_run.py:

diff --git a/dev/_sources/auto_examples/00_tutorials/sg_execution_times.rst.txt b/dev/_sources/auto_examples/00_tutorials/sg_execution_times.rst.txt
@@ -6,7 +6,7 @@
 
 Computation times
 =================
-**01:09.435** total execution time for 5 files **from auto_examples/00_tutorials**:
+**01:14.181** total execution time for 5 files **from auto_examples/00_tutorials**:
 
 .. container::
 
@@ -33,17 +33,17 @@ Computation times
      - Time
      - Mem (MB)
    * - :ref:`sphx_glr_auto_examples_00_tutorials_plot_decoding_tutorial.py` (``plot_decoding_tutorial.py``)
-     - 00:34.949
-     - 916.8
+     - 00:36.478
+     - 917.0
    * - :ref:`sphx_glr_auto_examples_00_tutorials_plot_single_subject_single_run.py` (``plot_single_subject_single_run.py``)
-     - 00:15.634
-     - 277.2
+     - 00:16.867
+     - 278.2
    * - :ref:`sphx_glr_auto_examples_00_tutorials_plot_3d_and_4d_niimg.py` (``plot_3d_and_4d_niimg.py``)
-     - 00:14.593
+     - 00:16.436
      - 216.6
    * - :ref:`sphx_glr_auto_examples_00_tutorials_plot_nilearn_101.py` (``plot_nilearn_101.py``)
-     - 00:04.021
-     - 199.4
+     - 00:04.145
+     - 175.0
    * - :ref:`sphx_glr_auto_examples_00_tutorials_plot_python_101.py` (``plot_python_101.py``)
-     - 00:00.238
-     - 9.8
+     - 00:00.254
+     - 10.0
diff --git a/dev/_sources/auto_examples/01_plotting/plot_3d_map_to_surface_projection.rst.txt b/dev/_sources/auto_examples/01_plotting/plot_3d_map_to_surface_projection.rst.txt
diff --git a/dev/_sources/auto_examples/01_plotting/plot_atlas.rst.txt b/dev/_sources/auto_examples/01_plotting/plot_atlas.rst.txt
@@ -86,7 +86,7 @@ Visualizing the Harvard-Oxford atlas
  .. code-block:: none
 
 
-    <nilearn.plotting.displays._slicers.OrthoSlicer object at 0x7f005d243d10>
+    <nilearn.plotting.displays._slicers.OrthoSlicer object at 0x7fe898b68710>
 
 
 
@@ -116,7 +116,7 @@ Visualizing the Juelich atlas
  .. code-block:: none
 
 
-    <nilearn.plotting.displays._slicers.OrthoSlicer object at 0x7f006b54cfb0>
+    <nilearn.plotting.displays._slicers.OrthoSlicer object at 0x7fe88b71fb60>
 
 
 
@@ -149,7 +149,7 @@ Visualizing the Harvard-Oxford atlas with contours
 
  .. code-block:: none
 
-    /opt/hostedtoolcache/Python/3.12.2/x64/lib/python3.12/site-packages/nilearn/plotting/img_plotting.py:798: UserWarning: Data array used to create a new image contains 64-bit ints. This is likely due to creating the array with numpy and passing `int` as the `dtype`. Many tools such as FSL and SPM cannot deal with int64 in Nifti images, so for compatibility the data has been converted to int32.
+    /opt/hostedtoolcache/Python/3.12.2/x64/lib/python3.12/site-packages/nilearn/plotting/img_plotting.py:817: UserWarning: Data array used to create a new image contains 64-bit ints. This is likely due to creating the array with numpy and passing `int` as the `dtype`. Many tools such as FSL and SPM cannot deal with int64 in Nifti images, so for compatibility the data has been converted to int32.
       img = new_img_like(roi_img, data, affine=roi_img.affine)
 
 
@@ -184,9 +184,9 @@ Visualizing the Juelich atlas with contours
 
 .. rst-class:: sphx-glr-timing
 
-   **Total running time of the script:** (0 minutes 58.249 seconds)
+   **Total running time of the script:** (1 minutes 1.098 seconds)
 
-**Estimated memory usage:**  436 MB
+**Estimated memory usage:**  429 MB
 
 
 .. _sphx_glr_download_auto_examples_01_plotting_plot_atlas.py:

diff --git a/dev/_sources/auto_examples/01_plotting/plot_carpet.rst.txt b/dev/_sources/auto_examples/01_plotting/plot_carpet.rst.txt
@@ -206,9 +206,9 @@ Visualizing global patterns, separated by tissue type
 
 .. rst-class:: sphx-glr-timing
 
-   **Total running time of the script:** (0 minutes 6.167 seconds)
+   **Total running time of the script:** (0 minutes 6.369 seconds)
 
-**Estimated memory usage:**  956 MB
+**Estimated memory usage:**  978 MB
 
 
 .. _sphx_glr_download_auto_examples_01_plotting_plot_carpet.py:

diff --git a/dev/_sources/auto_examples/01_plotting/plot_colormaps.rst.txt b/dev/_sources/auto_examples/01_plotting/plot_colormaps.rst.txt
@@ -113,7 +113,7 @@ Plot matplotlib color maps
 
 .. rst-class:: sphx-glr-timing
 
-   **Total running time of the script:** (0 minutes 2.913 seconds)
+   **Total running time of the script:** (0 minutes 3.042 seconds)
 
 **Estimated memory usage:**  18 MB
 

diff --git a/dev/_sources/auto_examples/01_plotting/plot_demo_glass_brain.rst.txt b/dev/_sources/auto_examples/01_plotting/plot_demo_glass_brain.rst.txt
@@ -72,7 +72,7 @@ Glass brain plotting: whole brain sagittal cuts
  .. code-block:: none
 
 
-    <nilearn.plotting.displays._projectors.OrthoProjector object at 0x7f006bb971d0>
+    <nilearn.plotting.displays._projectors.OrthoProjector object at 0x7fe899376fc0>
 
 
 
@@ -109,7 +109,7 @@ the z view (option "display_mode").
  .. code-block:: none
 
 
-    <nilearn.plotting.displays._projectors.XZProjector object at 0x7f006b599a00>
+    <nilearn.plotting.displays._projectors.XZProjector object at 0x7fe898bb5c40>
 
 
 
@@ -146,9 +146,9 @@ Glass brain plotting: Hemispheric sagittal cuts
 
 .. rst-class:: sphx-glr-timing
 
-   **Total running time of the script:** (0 minutes 3.147 seconds)
+   **Total running time of the script:** (0 minutes 3.426 seconds)
 
-**Estimated memory usage:**  15 MB
+**Estimated memory usage:**  17 MB
 
 
 .. _sphx_glr_download_auto_examples_01_plotting_plot_demo_glass_brain.py:

diff --git a/dev/_sources/auto_examples/01_plotting/plot_demo_glass_brain_extensive.rst.txt b/dev/_sources/auto_examples/01_plotting/plot_demo_glass_brain_extensive.rst.txt
@@ -104,7 +104,7 @@ a :class:`~nilearn.plotting.displays.OrthoProjector` is returned.
  .. code-block:: none
 
 
-    <nilearn.plotting.displays._projectors.OrthoProjector object at 0x7f0056fda510>
+    <nilearn.plotting.displays._projectors.OrthoProjector object at 0x7fe8993e47d0>
 
 
 
@@ -135,7 +135,7 @@ setting ``colorbar=True``.
  .. code-block:: none
 
 
-    <nilearn.plotting.displays._projectors.OrthoProjector object at 0x7f0057930ef0>
+    <nilearn.plotting.displays._projectors.OrthoProjector object at 0x7fe898dc0770>
 
 
 
@@ -173,7 +173,7 @@ axial projections by setting ``display_mode='xz'``, which returns a
  .. code-block:: none
 
 
-    <nilearn.plotting.displays._projectors.XZProjector object at 0x7f0077c06360>
+    <nilearn.plotting.displays._projectors.XZProjector object at 0x7fe8813eaae0>
 
 
 
@@ -208,7 +208,7 @@ Additionally, we only visualize coronal and axial projections by setting
  .. code-block:: none
 
 
-    <nilearn.plotting.displays._projectors.YZProjector object at 0x7f005c222d80>
+    <nilearn.plotting.displays._projectors.YZProjector object at 0x7fe88b753fb0>
 
 
 
@@ -240,7 +240,7 @@ Setting ``plot_abs=True`` and ``display_mode='yx'`` (returns a
  .. code-block:: none
 
 
-    <nilearn.plotting.displays._projectors.YXProjector object at 0x7f005d175ca0>
+    <nilearn.plotting.displays._projectors.YXProjector object at 0x7fe899340110>
 
 
 
@@ -281,7 +281,7 @@ colorbar will not be centered around zero.
  .. code-block:: none
 
 
-    <nilearn.plotting.displays._projectors.YZProjector object at 0x7f0056c61730>
+    <nilearn.plotting.displays._projectors.YZProjector object at 0x7fe89912ec00>
 
 
 
@@ -319,7 +319,7 @@ losing colours due to the thresholding.
  .. code-block:: none
 
 
-    <nilearn.plotting.displays._projectors.YZProjector object at 0x7f005798b7a0>
+    <nilearn.plotting.displays._projectors.YZProjector object at 0x7fe898a1fd70>
 
 
 
@@ -363,7 +363,7 @@ enables an hemispheric sagittal view. The display object returned is then a
  .. code-block:: none
 
 
-    <nilearn.plotting.displays._projectors.LZRProjector object at 0x7f006b6e8530>
+    <nilearn.plotting.displays._projectors.LZRProjector object at 0x7fe898923620>
 
 
 
@@ -401,7 +401,7 @@ enables an hemispheric sagittal view. The display object returned is then a
  .. code-block:: none
 
 
-    <nilearn.plotting.displays._projectors.LYRZProjector object at 0x7f0057b3f950>
+    <nilearn.plotting.displays._projectors.LYRZProjector object at 0x7fe898b56c90>
 
 
 
@@ -444,7 +444,7 @@ If you are only interested in single projections, you can set
  .. code-block:: none
 
 
-    <nilearn.plotting.displays._projectors.XProjector object at 0x7f006ba86930>
+    <nilearn.plotting.displays._projectors.XProjector object at 0x7fe898a34d10>
 
 
 
@@ -828,9 +828,9 @@ Next, using the same display object, we plot positive sign of activation.
 
 .. rst-class:: sphx-glr-timing
 
-   **Total running time of the script:** (0 minutes 24.673 seconds)
+   **Total running time of the script:** (0 minutes 27.106 seconds)
 
-**Estimated memory usage:**  9 MB
+**Estimated memory usage:**  10 MB
 
 
 .. _sphx_glr_download_auto_examples_01_plotting_plot_demo_glass_brain_extensive.py: