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nilearn · Sep 23, 2024 · ed92619 · ed92619
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diff --git a/dev/_downloads/fea3af77ca714bc79a6ef19a9de3e2bd/plot_haxby_searchlight_surface.zip b/dev/_downloads/fea3af77ca714bc79a6ef19a9de3e2bd/plot_haxby_searchlight_surface.zip
diff --git a/dev/_downloads/ff1c3f1839b56e730a233c58d5a283c9/plot_haxby_different_estimators.zip b/dev/_downloads/ff1c3f1839b56e730a233c58d5a283c9/plot_haxby_different_estimators.zip
diff --git a/dev/_images/sphx_glr_plot_advanced_decoding_scikit_001.png b/dev/_images/sphx_glr_plot_advanced_decoding_scikit_001.png
diff --git a/dev/_images/sphx_glr_plot_advanced_decoding_scikit_thumb.png b/dev/_images/sphx_glr_plot_advanced_decoding_scikit_thumb.png
diff --git a/dev/_images/sphx_glr_plot_beta_series_001.png b/dev/_images/sphx_glr_plot_beta_series_001.png
diff --git a/dev/_images/sphx_glr_plot_beta_series_002.png b/dev/_images/sphx_glr_plot_beta_series_002.png
diff --git a/dev/_images/sphx_glr_plot_beta_series_003.png b/dev/_images/sphx_glr_plot_beta_series_003.png
diff --git a/dev/_images/sphx_glr_plot_beta_series_004.png b/dev/_images/sphx_glr_plot_beta_series_004.png
diff --git a/dev/_images/sphx_glr_plot_beta_series_005.png b/dev/_images/sphx_glr_plot_beta_series_005.png
diff --git a/dev/_images/sphx_glr_plot_beta_series_thumb.png b/dev/_images/sphx_glr_plot_beta_series_thumb.png
diff --git a/dev/_images/sphx_glr_plot_bids_analysis_001.png b/dev/_images/sphx_glr_plot_bids_analysis_001.png
diff --git a/dev/_images/sphx_glr_plot_bids_analysis_002.png b/dev/_images/sphx_glr_plot_bids_analysis_002.png
diff --git a/dev/_images/sphx_glr_plot_bids_analysis_thumb.png b/dev/_images/sphx_glr_plot_bids_analysis_thumb.png
diff --git a/dev/_images/sphx_glr_plot_design_matrix_001.png b/dev/_images/sphx_glr_plot_design_matrix_001.png
diff --git a/dev/_images/sphx_glr_plot_design_matrix_002.png b/dev/_images/sphx_glr_plot_design_matrix_002.png
diff --git a/dev/_images/sphx_glr_plot_design_matrix_thumb.png b/dev/_images/sphx_glr_plot_design_matrix_thumb.png
diff --git a/dev/_images/sphx_glr_plot_first_level_details_024.png b/dev/_images/sphx_glr_plot_first_level_details_024.png
diff --git a/dev/_images/sphx_glr_plot_haxby_anova_svm_001.png b/dev/_images/sphx_glr_plot_haxby_anova_svm_001.png
diff --git a/dev/_images/sphx_glr_plot_haxby_anova_svm_thumb.png b/dev/_images/sphx_glr_plot_haxby_anova_svm_thumb.png
diff --git a/dev/_images/sphx_glr_plot_haxby_different_estimators_002.png b/dev/_images/sphx_glr_plot_haxby_different_estimators_002.png
diff --git a/dev/_images/sphx_glr_plot_haxby_different_estimators_005.png b/dev/_images/sphx_glr_plot_haxby_different_estimators_005.png
diff --git a/dev/_images/sphx_glr_plot_haxby_full_analysis_001.png b/dev/_images/sphx_glr_plot_haxby_full_analysis_001.png
diff --git a/dev/_images/sphx_glr_plot_haxby_full_analysis_thumb.png b/dev/_images/sphx_glr_plot_haxby_full_analysis_thumb.png
diff --git a/dev/_images/sphx_glr_plot_haxby_grid_search_001.png b/dev/_images/sphx_glr_plot_haxby_grid_search_001.png
diff --git a/dev/_images/sphx_glr_plot_haxby_grid_search_thumb.png b/dev/_images/sphx_glr_plot_haxby_grid_search_thumb.png
diff --git a/dev/_images/sphx_glr_plot_haxby_mass_univariate_002.png b/dev/_images/sphx_glr_plot_haxby_mass_univariate_002.png
diff --git a/dev/_images/sphx_glr_plot_haxby_searchlight_001.png b/dev/_images/sphx_glr_plot_haxby_searchlight_001.png
diff --git a/dev/_images/sphx_glr_plot_haxby_searchlight_thumb.png b/dev/_images/sphx_glr_plot_haxby_searchlight_thumb.png
diff --git a/dev/_images/sphx_glr_plot_localizer_mass_univariate_methods_001.png b/dev/_images/sphx_glr_plot_localizer_mass_univariate_methods_001.png
diff --git a/dev/_images/sphx_glr_plot_localizer_mass_univariate_methods_thumb.png b/dev/_images/sphx_glr_plot_localizer_mass_univariate_methods_thumb.png
diff --git a/dev/_images/sphx_glr_plot_oasis_vbm_004.png b/dev/_images/sphx_glr_plot_oasis_vbm_004.png
diff --git a/dev/_images/sphx_glr_plot_second_level_association_test_003.png b/dev/_images/sphx_glr_plot_second_level_association_test_003.png
diff --git a/dev/_images/sphx_glr_plot_second_level_one_sample_test_003.png b/dev/_images/sphx_glr_plot_second_level_one_sample_test_003.png
diff --git a/dev/_images/sphx_glr_plot_simulated_data_006.png b/dev/_images/sphx_glr_plot_simulated_data_006.png
diff --git a/dev/_sources/auto_examples/00_tutorials/plot_3d_and_4d_niimg.rst.txt b/dev/_sources/auto_examples/00_tutorials/plot_3d_and_4d_niimg.rst.txt
@@ -127,7 +127,7 @@ statistical map:
  .. code-block:: none
 
 
-    <nilearn.plotting.displays._slicers.OrthoSlicer object at 0x7fed932d56d0>
+    <nilearn.plotting.displays._slicers.OrthoSlicer object at 0x7f7c8d4c6660>
 
 
 
@@ -156,7 +156,7 @@ Visualizing works better with a threshold
  .. code-block:: none
 
 
-    <nilearn.plotting.displays._slicers.OrthoSlicer object at 0x7fed92d8a0f0>
+    <nilearn.plotting.displays._slicers.OrthoSlicer object at 0x7f7c8cefd130>
 
 
 
@@ -185,7 +185,8 @@ correspondence between rest and task
 
     [get_dataset_dir] Dataset found in /home/runner/work/nilearn/nilearn/nilearn_data/smith_2009
     [fetch_single_file] Downloading data from https://www.fmrib.ox.ac.uk/datasets/brainmap+rsns/PNAS_Smith09_rsn10.nii.gz ...
-    [fetch_single_file]  ...done. (2 seconds, 0 min)
+    [_chunk_read_]     Downloaded 1744896 of 7565016 bytes (23.1%,    3.4s remaining)
+    [fetch_single_file]  ...done. (4 seconds, 0 min)
 
 
     '/home/runner/work/nilearn/nilearn/nilearn_data/smith_2009/PNAS_Smith09_rsn10.nii.gz'
@@ -269,7 +270,7 @@ We can then plot it
  .. code-block:: none
 
 
-    <nilearn.plotting.displays._slicers.OrthoSlicer object at 0x7fed92359a00>
+    <nilearn.plotting.displays._slicers.OrthoSlicer object at 0x7f7c8c1499d0>
 
 
 
@@ -480,7 +481,7 @@ image.
 
 .. rst-class:: sphx-glr-timing
 
-   **Total running time of the script:** (0 minutes 18.032 seconds)
+   **Total running time of the script:** (0 minutes 21.712 seconds)
 
 **Estimated memory usage:**  366 MB
 

diff --git a/dev/_sources/auto_examples/00_tutorials/plot_decoding_tutorial.rst.txt b/dev/_sources/auto_examples/00_tutorials/plot_decoding_tutorial.rst.txt
diff --git a/dev/_sources/auto_examples/00_tutorials/plot_nilearn_101.rst.txt b/dev/_sources/auto_examples/00_tutorials/plot_nilearn_101.rst.txt
@@ -77,7 +77,7 @@ Let's quickly plot this file:
  .. code-block:: none
 
 
-    <nilearn.plotting.displays._slicers.OrthoSlicer object at 0x7fed930769f0>
+    <nilearn.plotting.displays._slicers.OrthoSlicer object at 0x7f7c8c08d9a0>
 
 
 
@@ -125,7 +125,7 @@ Here we give as inputs the image filename and the smoothing value in mm
  .. code-block:: none
 
 
-    <nibabel.nifti1.Nifti1Image object at 0x7fed93269a60>
+    <nibabel.nifti1.Nifti1Image object at 0x7f7c8c1f3c50>
 
 
 
@@ -154,7 +154,7 @@ instance to look at it
  .. code-block:: none
 
 
-    <nilearn.plotting.displays._slicers.OrthoSlicer object at 0x7fed92048ad0>
+    <nilearn.plotting.displays._slicers.OrthoSlicer object at 0x7f7c8d4e42c0>
 
 
 
@@ -184,7 +184,7 @@ We could also pass it to the smoothing function
  .. code-block:: none
 
 
-    <nilearn.plotting.displays._slicers.OrthoSlicer object at 0x7fed930db1d0>
+    <nilearn.plotting.displays._slicers.OrthoSlicer object at 0x7f7c8c0f1af0>
 
 
 
@@ -219,9 +219,14 @@ First let's fetch Haxby dataset for subject 1 and 2
 
     [get_dataset_dir] Dataset found in /home/runner/work/nilearn/nilearn/nilearn_data/haxby2001
     [fetch_single_file] Downloading data from http://data.pymvpa.org/datasets/haxby2001/subj1-2010.01.14.tar.gz ...
-    [_chunk_read_]     Downloaded 131129344 of 314803244 bytes (41.7%,    1.4s remaining)
-    [_chunk_read_]     Downloaded 270884864 of 314803244 bytes (86.0%,    0.3s remaining)
-    [fetch_single_file]  ...done. (3 seconds, 0 min)
+    [_chunk_read_]     Downloaded 20398080 of 314803244 bytes (6.5%,   14.6s remaining)
+    [_chunk_read_]     Downloaded 67108864 of 314803244 bytes (21.3%,    7.4s remaining)
+    [_chunk_read_]     Downloaded 114982912 of 314803244 bytes (36.5%,    5.3s remaining)
+    [_chunk_read_]     Downloaded 163004416 of 314803244 bytes (51.8%,    3.8s remaining)
+    [_chunk_read_]     Downloaded 208543744 of 314803244 bytes (66.2%,    2.6s remaining)
+    [_chunk_read_]     Downloaded 256811008 of 314803244 bytes (81.6%,    1.4s remaining)
+    [_chunk_read_]     Downloaded 305332224 of 314803244 bytes (97.0%,    0.2s remaining)
+    [fetch_single_file]  ...done. (8 seconds, 0 min)
 
     [uncompress_file] Extracting data from /home/runner/work/nilearn/nilearn/nilearn_data/haxby2001/b6297e3e4eedbdbfb999e3188d364506/subj1-2010.01.14.tar.gz...
     [uncompress_file] .. done.
@@ -355,9 +360,9 @@ passed on to other nilearn tools, or saved to disk.
 
 .. rst-class:: sphx-glr-timing
 
-   **Total running time of the script:** (0 minutes 9.814 seconds)
+   **Total running time of the script:** (0 minutes 15.140 seconds)
 
-**Estimated memory usage:**  364 MB
+**Estimated memory usage:**  397 MB
 
 
 .. _sphx_glr_download_auto_examples_00_tutorials_plot_nilearn_101.py:

diff --git a/dev/_sources/auto_examples/00_tutorials/plot_python_101.rst.txt b/dev/_sources/auto_examples/00_tutorials/plot_python_101.rst.txt
@@ -67,16 +67,16 @@ A simple example of basic Python numerics and how to plot it.
  .. code-block:: none
 
 
-    [<matplotlib.lines.Line2D object at 0x7fed88902000>]
+    [<matplotlib.lines.Line2D object at 0x7f7c828424e0>]
 
 
 
 
 .. rst-class:: sphx-glr-timing
 
-   **Total running time of the script:** (0 minutes 0.220 seconds)
+   **Total running time of the script:** (0 minutes 0.228 seconds)
 
-**Estimated memory usage:**  196 MB
+**Estimated memory usage:**  197 MB
 
 
 .. _sphx_glr_download_auto_examples_00_tutorials_plot_python_101.py:

diff --git a/dev/_sources/auto_examples/00_tutorials/plot_single_subject_single_run.rst.txt b/dev/_sources/auto_examples/00_tutorials/plot_single_subject_single_run.rst.txt
@@ -130,7 +130,7 @@ We can display the first functional image and the subject's anatomy:
  .. code-block:: none
 
 
-    <nilearn.plotting.displays._slicers.OrthoSlicer object at 0x7fed91f6b110>
+    <nilearn.plotting.displays._slicers.OrthoSlicer object at 0x7f7c8be3e630>
 
 
 
@@ -1265,9 +1265,9 @@ Oops, there is a lot of non-neural signal in there (ventricles, arteries)...
 
 .. rst-class:: sphx-glr-timing
 
-   **Total running time of the script:** (0 minutes 14.389 seconds)
+   **Total running time of the script:** (0 minutes 16.149 seconds)
 
-**Estimated memory usage:**  467 MB
+**Estimated memory usage:**  468 MB
 
 
 .. _sphx_glr_download_auto_examples_00_tutorials_plot_single_subject_single_run.py:

diff --git a/dev/_sources/auto_examples/00_tutorials/sg_execution_times.rst.txt b/dev/_sources/auto_examples/00_tutorials/sg_execution_times.rst.txt
@@ -6,7 +6,7 @@
 
 Computation times
 =================
-**01:15.425** total execution time for 5 files **from auto_examples/00_tutorials**:
+**01:28.528** total execution time for 5 files **from auto_examples/00_tutorials**:
 
 .. container::
 
@@ -33,17 +33,17 @@ Computation times
      - Time
      - Mem (MB)
    * - :ref:`sphx_glr_auto_examples_00_tutorials_plot_decoding_tutorial.py` (``plot_decoding_tutorial.py``)
-     - 00:32.970
-     - 1112.3
+     - 00:35.299
+     - 1144.4
    * - :ref:`sphx_glr_auto_examples_00_tutorials_plot_3d_and_4d_niimg.py` (``plot_3d_and_4d_niimg.py``)
-     - 00:18.032
-     - 365.6
+     - 00:21.712
+     - 365.7
    * - :ref:`sphx_glr_auto_examples_00_tutorials_plot_single_subject_single_run.py` (``plot_single_subject_single_run.py``)
-     - 00:14.389
-     - 466.7
+     - 00:16.149
+     - 467.6
    * - :ref:`sphx_glr_auto_examples_00_tutorials_plot_nilearn_101.py` (``plot_nilearn_101.py``)
-     - 00:09.814
-     - 363.5
+     - 00:15.140
+     - 396.8
    * - :ref:`sphx_glr_auto_examples_00_tutorials_plot_python_101.py` (``plot_python_101.py``)
-     - 00:00.220
-     - 196.4
+     - 00:00.228
+     - 196.9
diff --git a/dev/_sources/auto_examples/01_plotting/plot_3d_map_to_surface_projection.rst.txt b/dev/_sources/auto_examples/01_plotting/plot_3d_map_to_surface_projection.rst.txt
@@ -286,7 +286,7 @@ Plot 3D image for comparison
  .. code-block:: none
 
 
-    <nilearn.plotting.displays._slicers.XSlicer object at 0x7feda3210ce0>
+    <nilearn.plotting.displays._slicers.XSlicer object at 0x7f7c9d1cf500>
 
 
 
@@ -1524,9 +1524,9 @@ interpolation with zero radius will achieve this.
 
 .. rst-class:: sphx-glr-timing
 
-   **Total running time of the script:** (0 minutes 21.360 seconds)
+   **Total running time of the script:** (0 minutes 21.648 seconds)
 
-**Estimated memory usage:**  458 MB
+**Estimated memory usage:**  511 MB
 
 
 .. _sphx_glr_download_auto_examples_01_plotting_plot_3d_map_to_surface_projection.py:

diff --git a/dev/_sources/auto_examples/01_plotting/plot_atlas.rst.txt b/dev/_sources/auto_examples/01_plotting/plot_atlas.rst.txt
@@ -88,7 +88,7 @@ Visualizing the Harvard-Oxford atlas
  .. code-block:: none
 
 
-    <nilearn.plotting.displays._slicers.OrthoSlicer object at 0x7fed920db410>
+    <nilearn.plotting.displays._slicers.OrthoSlicer object at 0x7f7c8b6f9790>
 
 
 
@@ -118,7 +118,7 @@ Visualizing the Juelich atlas
  .. code-block:: none
 
 
-    <nilearn.plotting.displays._slicers.OrthoSlicer object at 0x7fed922026f0>
+    <nilearn.plotting.displays._slicers.OrthoSlicer object at 0x7f7c8d4c6720>
 
 
 
@@ -186,9 +186,9 @@ Visualizing the Juelich atlas with contours
 
 .. rst-class:: sphx-glr-timing
 
-   **Total running time of the script:** (0 minutes 48.206 seconds)
+   **Total running time of the script:** (0 minutes 54.060 seconds)
 
-**Estimated memory usage:**  579 MB
+**Estimated memory usage:**  627 MB
 
 
 .. _sphx_glr_download_auto_examples_01_plotting_plot_atlas.py:

diff --git a/dev/_sources/auto_examples/01_plotting/plot_carpet.rst.txt b/dev/_sources/auto_examples/01_plotting/plot_carpet.rst.txt
@@ -210,9 +210,9 @@ Visualizing global patterns, separated by tissue type
 
 .. rst-class:: sphx-glr-timing
 
-   **Total running time of the script:** (0 minutes 5.904 seconds)
+   **Total running time of the script:** (0 minutes 6.059 seconds)
 
-**Estimated memory usage:**  1085 MB
+**Estimated memory usage:**  1246 MB
 
 
 .. _sphx_glr_download_auto_examples_01_plotting_plot_carpet.py:

diff --git a/dev/_sources/auto_examples/01_plotting/plot_colormaps.rst.txt b/dev/_sources/auto_examples/01_plotting/plot_colormaps.rst.txt
@@ -113,7 +113,7 @@ Plot matplotlib color maps
 
 .. rst-class:: sphx-glr-timing
 
-   **Total running time of the script:** (0 minutes 2.875 seconds)
+   **Total running time of the script:** (0 minutes 2.952 seconds)
 
 **Estimated memory usage:**  205 MB
 

diff --git a/dev/_sources/auto_examples/01_plotting/plot_demo_glass_brain.rst.txt b/dev/_sources/auto_examples/01_plotting/plot_demo_glass_brain.rst.txt
@@ -72,7 +72,7 @@ Glass brain plotting: whole brain sagittal cuts
  .. code-block:: none
 
 
-    <nilearn.plotting.displays._projectors.OrthoProjector object at 0x7fed92dd6360>
+    <nilearn.plotting.displays._projectors.OrthoProjector object at 0x7f7c82a765a0>
 
 
 
@@ -109,7 +109,7 @@ the z view (option "display_mode").
  .. code-block:: none
 
 
-    <nilearn.plotting.displays._projectors.XZProjector object at 0x7fed9311d4f0>
+    <nilearn.plotting.displays._projectors.XZProjector object at 0x7f7c829bee10>
 
 
 
@@ -146,7 +146,7 @@ Glass brain plotting: Hemispheric sagittal cuts
 
 .. rst-class:: sphx-glr-timing
 
-   **Total running time of the script:** (0 minutes 3.202 seconds)
+   **Total running time of the script:** (0 minutes 3.411 seconds)
 
 **Estimated memory usage:**  203 MB
 

diff --git a/dev/_sources/auto_examples/01_plotting/plot_demo_glass_brain_extensive.rst.txt b/dev/_sources/auto_examples/01_plotting/plot_demo_glass_brain_extensive.rst.txt
@@ -104,7 +104,7 @@ a :class:`~nilearn.plotting.displays.OrthoProjector` is returned.
  .. code-block:: none
 
 
-    <nilearn.plotting.displays._projectors.OrthoProjector object at 0x7fed91b438c0>
+    <nilearn.plotting.displays._projectors.OrthoProjector object at 0x7f7c8c1f3a10>
 
 
 
@@ -135,7 +135,7 @@ setting ``colorbar=True``.
  .. code-block:: none
 
 
-    <nilearn.plotting.displays._projectors.OrthoProjector object at 0x7fed93aa8ce0>
+    <nilearn.plotting.displays._projectors.OrthoProjector object at 0x7f7c7ff8fce0>
 
 
 
@@ -173,7 +173,7 @@ axial projections by setting ``display_mode='xz'``, which returns a
  .. code-block:: none
 
 
-    <nilearn.plotting.displays._projectors.XZProjector object at 0x7feda36b2390>
+    <nilearn.plotting.displays._projectors.XZProjector object at 0x7f7c8bd83410>
 
 
 
@@ -208,7 +208,7 @@ Additionally, we only visualize coronal and axial projections by setting
  .. code-block:: none
 
 
-    <nilearn.plotting.displays._projectors.YZProjector object at 0x7fed92359850>
+    <nilearn.plotting.displays._projectors.YZProjector object at 0x7f7c8cecb740>
 
 
 
@@ -240,7 +240,7 @@ Setting ``plot_abs=True`` and ``display_mode='yx'`` (returns a
  .. code-block:: none
 
 
-    <nilearn.plotting.displays._projectors.YXProjector object at 0x7feda3054f50>
+    <nilearn.plotting.displays._projectors.YXProjector object at 0x7f7c8b467470>
 
 
 
@@ -282,7 +282,7 @@ colorbar will not be centered around zero.
  .. code-block:: none
 
 
-    <nilearn.plotting.displays._projectors.YZProjector object at 0x7fed91b424e0>
+    <nilearn.plotting.displays._projectors.YZProjector object at 0x7f7c8d4c6720>
 
 
 
@@ -321,7 +321,7 @@ losing colours due to the thresholding.
  .. code-block:: none
 
 
-    <nilearn.plotting.displays._projectors.YZProjector object at 0x7feda2983c50>
+    <nilearn.plotting.displays._projectors.YZProjector object at 0x7f7c8c0f25d0>
 
 
 
@@ -365,7 +365,7 @@ enables an hemispheric sagittal view. The display object returned is then a
  .. code-block:: none
 
 
-    <nilearn.plotting.displays._projectors.LZRProjector object at 0x7feda2f7b0e0>
+    <nilearn.plotting.displays._projectors.LZRProjector object at 0x7f7c9d5c2de0>
 
 
 
@@ -403,7 +403,7 @@ enables an hemispheric sagittal view. The display object returned is then a
  .. code-block:: none
 
 
-    <nilearn.plotting.displays._projectors.LYRZProjector object at 0x7fed91b2e750>
+    <nilearn.plotting.displays._projectors.LYRZProjector object at 0x7f7c8bef5490>
 
 
 
@@ -446,7 +446,7 @@ If you are only interested in single projections, you can set
  .. code-block:: none
 
 
-    <nilearn.plotting.displays._projectors.XProjector object at 0x7feda34d7b30>
+    <nilearn.plotting.displays._projectors.XProjector object at 0x7f7c9cffabd0>
 
 
 
@@ -830,7 +830,7 @@ Next, using the same display object, we plot positive sign of activation.
 
 .. rst-class:: sphx-glr-timing
 
-   **Total running time of the script:** (0 minutes 26.937 seconds)
+   **Total running time of the script:** (0 minutes 27.767 seconds)
 
 **Estimated memory usage:**  196 MB