clinic: add deploy job to the github workflow #31
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| name: Clinic | |
| on: | |
| push: | |
| branches: | |
| - main | |
| tags: | |
| - "**" | |
| paths-ignore: | |
| - "**.md" | |
| pull_request: | |
| branches: | |
| - main | |
| env: | |
| JDK_DISTRIBUTION: temurin | |
| JAVA_VERSION: 21 | |
| NODE_VERSION: 21 | |
| jobs: | |
| tests: | |
| name: Tests | |
| runs-on: ubuntu-latest | |
| timeout-minutes: 10 | |
| services: | |
| hapi-fhir: | |
| image: hapiproject/hapi:latest | |
| env: | |
| server.port: 8090 | |
| hapi.fhir.tester.home.server_address: http://localhost:8090/fhir | |
| hapi.fhir.allow_multiple_delete: true | |
| ports: | |
| - 8090:8090 | |
| defaults: | |
| run: | |
| working-directory: ./clinic | |
| steps: | |
| - name: Checkout Source | |
| uses: actions/checkout@v4 | |
| - name: Setup JDK | |
| uses: actions/setup-java@v3 | |
| with: | |
| distribution: ${{ env.JDK_DISTRIBUTION }} | |
| java-version: ${{ env.JAVA_VERSION }} | |
| - name: Setup Lein Dependency Cache | |
| uses: actions/cache@v3 | |
| with: | |
| path: ~/.m2/repository | |
| key: ${{ runner.os }}-lein-${{ hashFiles('clinic/project.clj') }} | |
| # can't use `services.[id].options` to add Docker health checks because | |
| # HAPI has a scratch docker image without a shell installation. | |
| - name: HAPI FHIR Health Check | |
| run: while ! curl -sSI "http://localhost:8090"; do sleep 5; done | |
| - name: Run Tests | |
| run: lein test | |
| build: | |
| name: Build | |
| runs-on: ubuntu-latest | |
| timeout-minutes: 10 | |
| if: github.event_name == 'push' # skip for pull requests. | |
| needs: | |
| - tests | |
| permissions: | |
| contents: read | |
| packages: write | |
| defaults: | |
| run: | |
| working-directory: ./clinic | |
| steps: | |
| - name: Checkout Source | |
| uses: actions/checkout@v4 | |
| - name: Setup JDK | |
| uses: actions/setup-java@v3 | |
| with: | |
| distribution: ${{ env.JDK_DISTRIBUTION }} | |
| java-version: ${{ env.JAVA_VERSION }} | |
| - name: Setup Node.js | |
| uses: actions/setup-node@v3 | |
| with: | |
| node-version: ${{ env.NODE_VERSION }} | |
| cache: npm | |
| cache-dependency-path: clinic/package-lock.json | |
| - name: Setup Lein Dependency Cache | |
| uses: actions/cache@v3 | |
| with: | |
| path: ~/.m2/repository | |
| key: ${{ runner.os }}-lein-${{ hashFiles('clinic/project.clj') }} | |
| - name: Build CLJS | |
| run: | | |
| npm install | |
| npx shadow-cljs release app | |
| - name: Build Uberjar | |
| run: lein uberjar | |
| - name: Login to GitHub Container Registry | |
| uses: docker/login-action@v3 | |
| with: | |
| registry: ghcr.io | |
| username: ${{ github.actor }} | |
| password: ${{ secrets.GITHUB_TOKEN }} | |
| - name: Generate Docker Image Tags | |
| id: docker-image-tags | |
| run: | | |
| image_name=ghcr.io/nilenso/ashutosh-onboarding/clinic | |
| image_tags="${image_name}:latest" | |
| if [[ "$GITHUB_REF" =~ refs/tags/* ]]; then | |
| image_tags="${image_tags},${image_name}:${{ github.ref_name }}" | |
| fi | |
| echo "tags=$image_tags" >> "$GITHUB_OUTPUT" | |
| - name: Build and Push Latest Docker Image | |
| uses: docker/build-push-action@v5 | |
| with: | |
| context: clinic | |
| push: true | |
| tags: ${{ steps.docker-image-tags.outputs.tags }} | |
| deploy: | |
| name: Deploy | |
| runs-on: ubuntu-latest | |
| timeout-minutes: 10 | |
| if: github.event_name == 'push' # skip for pull requests. | |
| needs: | |
| - build | |
| # GitHub won't allow using an env var to specify environment. | |
| environment: ${{ startsWith(github.ref, 'refs/tags/') && 'production' || 'staging' }} | |
| env: | |
| DEPLOYMENT_ID: ${{ startsWith(github.ref, 'refs/tags/') && 'production' || 'staging' }} | |
| SCP_DEST_PATH: /tmp/${{ github.sha }} | |
| AWS_DEFAULT_REGION: ${{ secrets.AWS_REGION }} | |
| AWS_ACCESS_KEY_ID: ${{ secrets.DEPLOY_BOT_ACCESS_KEY }} | |
| defaults: | |
| run: | |
| working-directory: ./clinic | |
| steps: | |
| - name: Checkout Source | |
| uses: actions/checkout@v4 | |
| - name: Install prerequisites | |
| run: | | |
| sudo apt-get -qq update -y | |
| sudo apt-get -qq install -y awscli | |
| - name: Get Workflow Runner's Public IP | |
| id: workflow-runner-ip | |
| run: echo "ipv4=$(curl -s 'https://api.ipify.org')" >> "$GITHUB_OUTPUT" | |
| - name: Authorize runner's SSH access to EC2 host | |
| run: | | |
| aws ec2 authorize-security-group-ingress \ | |
| --group-id "$AWS_EC2_SG_ID" \ | |
| --protocol tcp \ | |
| --port 22 \ | |
| --cidr ${{ steps.workflow-runner-ip.outputs.ipv4 }}/32 | |
| env: | |
| AWS_SECRET_ACCESS_KEY: ${{ secrets.DEPLOY_BOT_SECRET_KEY }} | |
| AWS_EC2_SG_ID: ${{ secrets.AWS_EC2_SG_ID }} | |
| - name: Upload Systemd Service and Logrotate Config | |
| uses: appleboy/[email protected] | |
| with: | |
| host: ${{ secrets.SSH_HOST }} | |
| username: ${{ secrets.SSH_USER }} | |
| port: ${{ secrets.SSH_PORT }} | |
| key: ${{ secrets.SSH_KEY }} | |
| source: clinic/deploy/systemd,clinic/deploy/logrotate | |
| target: ${{ env.SCP_DEST_PATH }} | |
| strip_components: 2 # remove `clinic/deploy/` path component at target. | |
| rm: true # remove target directory before uploading data | |
| - name: Configure Deployment | |
| uses: appleboy/[email protected] | |
| env: | |
| APP_ENV: ${{ secrets.APP_ENV }} | |
| GHCR_USER: ${{ github.actor }} | |
| GHCR_TOKEN: ${{ github.token }} | |
| GHCR_IMAGE: ghcr.io/nilenso/ashutosh-onboarding/clinic:${{ env.DEPLOYMENT_ID == 'staging' && 'latest' || github.ref_name }} | |
| with: | |
| host: ${{ secrets.SSH_HOST }} | |
| username: ${{ secrets.SSH_USER }} | |
| port: ${{ secrets.SSH_PORT }} | |
| key: ${{ secrets.SSH_KEY }} | |
| envs: APP_ENV,GHCR_USER,GHCR_TOKEN,GHCR_IMAGE | |
| script_stop: true # stop script after first failure. | |
| script: | | |
| # stop existing deployment | |
| service_name="clinic@${DEPLOYMENT_ID}.service" | |
| sudo systemctl stop "$service_name" || true | |
| # pull and tag the new docker image | |
| echo "$GHCR_TOKEN" | docker login ghcr.io -u "$GHCR_USER" --password-stdin | |
| docker pull "$GHCR_IMAGE" | |
| docker tag "$GHCR_IMAGE" "clinic:${DEPLOYMENT_ID}" | |
| docker logout ghcr.io | |
| # write environment configuration | |
| sudo mkdir -p /etc/clinic | |
| echo "$APP_ENV" | sudo tee "/etc/clinic/${DEPLOYMENT_ID}.env" > /dev/null | |
| # update systemd unit | |
| sudo chown root:root ${{ env.SCP_DEST_PATH }}/systemd/* | |
| sudo chmod 644 ${{ env.SCP_DEST_PATH }}/systemd/* | |
| sudo mv ${{ env.SCP_DEST_PATH }}/systemd/* /etc/systemd/system/ | |
| # reload systemd daemon and restart the service | |
| sudo systemctl daemon-reload | |
| sudo systemctl reenable "$service_name" | |
| sudo systemctl restart "$service_name" | |
| # deploy logrotate config | |
| sudo chown root:root ${{ env.SCP_DEST_PATH }}/logrotate/* | |
| sudo chmod 644 ${{ env.SCP_DEST_PATH }}/logrotate/* | |
| sudo mv ${{ env.SCP_DEST_PATH }}/logrotate/* /etc/logrotate/ | |
| # clean-up | |
| sudo docker image prune -af | |
| sudo rm -rf ${{ env.SCP_DEST_PATH }} | |
| - name: Revoke runner's SSH access from EC2 host | |
| if: ${{ always() }} | |
| run: | | |
| aws ec2 revoke-security-group-ingress \ | |
| --group-id "$AWS_EC2_SG_ID" \ | |
| --protocol tcp \ | |
| --port 22 \ | |
| --cidr ${{ steps.workflow-runner-ip.outputs.ipv4 }}/32 | |
| env: | |
| AWS_SECRET_ACCESS_KEY: ${{ secrets.DEPLOY_BOT_SECRET_KEY }} | |
| AWS_EC2_SG_ID: ${{ secrets.AWS_EC2_SG_ID }} |