MNT: Update nipreps pins and re-generate requirements.txt

pyproject.toml

@@ -24,15 +24,15 @@ dependencies = [
     "nireports >= 23.1.0",
     "nitime",
     "nitransforms >= 21.0.0",
-    "niworkflows @ git+https://github.com/nipreps/niworkflows.git@master",
+    "niworkflows >= 1.9.0",
     "numpy >= 1.22",
     "packaging",
     "pandas",
     "psutil >= 5.4",
     "pybids >= 0.15.2",
     "requests",
-    "sdcflows  @ git+https://github.com/nipreps/sdcflows.git@master",
-    "smriprep @ git+https://github.com/nipreps/smriprep.git@master",
+    "sdcflows >= 2.6.0",
+    "smriprep >= 0.13.0",
     "tedana >= 0.0.9",
     "templateflow >= 23.0.0",
     "toml",

requirements.txt

@@ -27,7 +27,7 @@ bokeh==2.2.3
     # via tedana
 boto==2.49.0
     # via datalad
-certifi==2023.7.22
+certifi==2023.11.17
     # via
     #   requests
     #   sentry-sdk
@@ -75,7 +75,7 @@ fasteners==0.19
     # via datalad
 filelock==3.13.1
     # via nipype
-fonttools==4.44.0
+fonttools==4.45.0
     # via matplotlib
 formulaic==0.5.2
     # via pybids
@@ -91,7 +91,7 @@ humanize==4.8.0
     #   datalad-next
 idna==3.4
     # via requests
-imageio==2.32.0
+imageio==2.33.0
     # via scikit-image
 importlib-metadata==6.8.0
     # via keyring
@@ -152,16 +152,18 @@ mapca==0.0.4
     # via tedana
 markupsafe==2.1.3
     # via jinja2
-matplotlib==3.8.1
+matplotlib==3.8.2
     # via
     #   nireports
     #   nitime
     #   niworkflows
     #   seaborn
     #   smriprep
     #   tedana
-migas==0.3.0
-    # via fmriprep
+migas==0.4.0
+    # via
+    #   file:///home/chris/projects/nipreps/fmriprep-ng
+    #   fmriprep
 more-itertools==10.1.0
     # via jaraco-classes
 msgpack==1.0.7
@@ -213,7 +215,7 @@ nitransforms==23.0.1
     #   fmriprep (pyproject.toml)
     #   niworkflows
     #   sdcflows
-niworkflows==1.8.1
+niworkflows==1.9.0
     # via
     #   fmriprep
     #   fmriprep (pyproject.toml)
@@ -277,17 +279,17 @@ pandas==2.1.3
     #   pybids
     #   seaborn
     #   tedana
-patool==1.15.0
+patool==2.0.0
     # via datalad
-pillow==10.0.1
+pillow==10.1.0
     # via
     #   bokeh
     #   imageio
     #   matplotlib
     #   scikit-image
 platformdirs==4.0.0
     # via datalad
-prometheus-client==0.18.0
+prometheus-client==0.19.0
     # via codecarbon
 prov==2.0.0
     # via nipype
@@ -365,7 +367,7 @@ scikit-learn==1.3.2
     #   mapca
     #   nilearn
     #   tedana
-scipy==1.11.3
+scipy==1.11.4
     # via
     #   formulaic
     #   mapca
@@ -379,7 +381,7 @@ scipy==1.11.3
     #   scikit-learn
     #   sdcflows
     #   tedana
-sdcflows==2.5.1
+sdcflows==2.6.0
     # via
     #   fmriprep
     #   fmriprep (pyproject.toml)
@@ -389,8 +391,10 @@ seaborn==0.13.0
     #   niworkflows
 secretstorage==3.3.3
     # via keyring
-sentry-sdk==1.35.0
-    # via fmriprep
+sentry-sdk==1.36.0
+    # via
+    #   file:///home/chris/projects/nipreps/fmriprep-ng
+    #   fmriprep
 simplejson==3.19.2
     # via nipype
 six==1.16.0
@@ -399,7 +403,7 @@ six==1.16.0
     #   isodate
     #   osfclient
     #   python-dateutil
-smriprep==0.12.2
+smriprep==0.13.0
     # via
     #   fmriprep
     #   fmriprep (pyproject.toml)