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@effigies effigies released this 24 Jan 16:43
· 1056 commits to master since this release
21.0.1
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Release Notes

Bug-fix release in the 21.0.x series.

This release re-enables reverse-PE EPI fieldmaps, i.e. EPIs acquired with the opposite phase-encoding direction to a BOLD series.
Additionally, the --use-syn-sdc option will now error by default if no PhaseEncodingDirection can be found for a BOLD series. To reduce this to a warning, use --use-syn-sdc warn. SyN-SDC will NOT be run, but the workflow will proceed.

NOTE:

topup runtime scales with the number of volumes used, so fMRIPrep defaults to using a maximum of 5 volumes from each of the BOLD series and the EPI fieldmap. To adjust this, please use the --topup-max-vols parameter.

Changes

  • FIX: Create single fmap_select_std node for use with all ANAT estimators (#2692)
  • FIX: Re-enable reverse-PE EPI fieldmaps (#2684)
  • FIX: Pass boolean use_syn_sdc to find_estimators (#2685)
  • FIX: Ensure AROMA inputs are uncompressed if --low-mem (#2657)
  • ENH: Add --topup-max-vols flag to control TOPUP runtime (#2688)
  • ENH: Allow --use-syn-sdc to take a "warn" option to avoid exiting when PE dir is unavailable (#2680)
  • RF: Add extension field to differentiate from upcoming templates (#2613)
  • WRAPPER: Map --bids-filter-file\s into Docker container (#2691)
  • MNT: Silence warning from pybids; list packaging as dependency (#2689)
  • MNT: Add netbase to Docker image to ensure correct datalad operation (#2682)
  • MNT: Restore nitime to requirements, necessary for DVARS (#2678)
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