docs(master): Update docs of development line

master/_modules/niworkflows/workflows/epi/refmap.html

@@ -393,7 +393,7 @@ <h1>Source code for niworkflows.workflows.epi.refmap</h1><div class="highlight">
 <span class="sd">    n_dummy_scans : :obj:`list` of :obj:`int`</span>
 <span class="sd">        Number of nonsteady states at the beginning of each run (only BOLD with</span>
 <span class="sd">        ``auto_bold_nss=True``)</span>
-<span class="sd">    validate_report : :obj:`str`</span>
+<span class="sd">    validation_report : :obj:`str`</span>
 <span class="sd">        HTML reportlet(s) indicating whether the input files had a valid affine</span>
 
 <span class="sd">    See Also</span>

master/api/niworkflows.interfaces.confounds.html

@@ -398,14 +398,14 @@
 indicates that the first and second exponential terms should be added.
 To retain the original terms, <code class="docutils literal notranslate"><span class="pre">1</span></code> <em>must</em> be included in the list.</p></li>
 <li><p><strong>variables</strong> (<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#list" title="(in Python v3.12)"><code class="xref py py-obj docutils literal notranslate"><span class="pre">list</span></code></a> of <a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.12)"><code class="xref py py-obj docutils literal notranslate"><span class="pre">str</span></code></a>) – List of variables for which exponential terms should be computed.</p></li>
-<li><p><strong>data</strong> (<a class="reference external" href="https://pandas.pydata.org/pandas-docs/dev/reference/api/pandas.DataFrame.html#pandas.DataFrame" title="(in pandas v2.2.0.dev0+621.gde9815c6c5)"><code class="xref py py-obj docutils literal notranslate"><span class="pre">DataFrame</span></code></a>) – Table of values of all observations of all variables.</p></li>
+<li><p><strong>data</strong> (<a class="reference external" href="https://pandas.pydata.org/pandas-docs/dev/reference/api/pandas.DataFrame.html#pandas.DataFrame" title="(in pandas v2.2.0.dev0+750.g7012d6a607)"><code class="xref py py-obj docutils literal notranslate"><span class="pre">DataFrame</span></code></a>) – Table of values of all observations of all variables.</p></li>
 </ul>
 </dd>
 <dt class="field-even">Returns<span class="colon">:</span></dt>
 <dd class="field-even"><p><ul class="simple">
 <li><p><strong>variables_exp</strong> (<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#list" title="(in Python v3.12)"><code class="xref py py-obj docutils literal notranslate"><span class="pre">list</span></code></a>) – A list of variables to include in the final data frame after adding
 the specified exponential terms.</p></li>
-<li><p><strong>data_exp</strong> (<a class="reference external" href="https://pandas.pydata.org/pandas-docs/dev/reference/api/pandas.DataFrame.html#pandas.DataFrame" title="(in pandas v2.2.0.dev0+621.gde9815c6c5)"><code class="xref py py-obj docutils literal notranslate"><span class="pre">DataFrame</span></code></a>) – Table of values of all observations of all variables, including any
+<li><p><strong>data_exp</strong> (<a class="reference external" href="https://pandas.pydata.org/pandas-docs/dev/reference/api/pandas.DataFrame.html#pandas.DataFrame" title="(in pandas v2.2.0.dev0+750.g7012d6a607)"><code class="xref py py-obj docutils literal notranslate"><span class="pre">DataFrame</span></code></a>) – Table of values of all observations of all variables, including any
 specified exponential terms.</p></li>
 </ul>
 </p>
@@ -422,13 +422,13 @@
 <dd class="field-odd"><ul class="simple">
 <li><p><strong>expression</strong> (<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.12)"><code class="xref py py-obj docutils literal notranslate"><span class="pre">str</span></code></a>) – Formula expression: either a single variable or a variable group
 paired with an operation (exponentiation or differentiation).</p></li>
-<li><p><strong>parent_data</strong> (<a class="reference external" href="https://pandas.pydata.org/pandas-docs/dev/reference/api/pandas.DataFrame.html#pandas.DataFrame" title="(in pandas v2.2.0.dev0+621.gde9815c6c5)"><code class="xref py py-obj docutils literal notranslate"><span class="pre">DataFrame</span></code></a>) – The source data for the model expansion.</p></li>
+<li><p><strong>parent_data</strong> (<a class="reference external" href="https://pandas.pydata.org/pandas-docs/dev/reference/api/pandas.DataFrame.html#pandas.DataFrame" title="(in pandas v2.2.0.dev0+750.g7012d6a607)"><code class="xref py py-obj docutils literal notranslate"><span class="pre">DataFrame</span></code></a>) – The source data for the model expansion.</p></li>
 </ul>
 </dd>
 <dt class="field-even">Returns<span class="colon">:</span></dt>
 <dd class="field-even"><p><ul class="simple">
 <li><p><strong>variables</strong> (<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#list" title="(in Python v3.12)"><code class="xref py py-obj docutils literal notranslate"><span class="pre">list</span></code></a>) – A list of variables in the provided formula expression.</p></li>
-<li><p><strong>data</strong> (<a class="reference external" href="https://pandas.pydata.org/pandas-docs/dev/reference/api/pandas.DataFrame.html#pandas.DataFrame" title="(in pandas v2.2.0.dev0+621.gde9815c6c5)"><code class="xref py py-obj docutils literal notranslate"><span class="pre">DataFrame</span></code></a>) – A tabulation of all terms in the provided formula expression.</p></li>
+<li><p><strong>data</strong> (<a class="reference external" href="https://pandas.pydata.org/pandas-docs/dev/reference/api/pandas.DataFrame.html#pandas.DataFrame" title="(in pandas v2.2.0.dev0+750.g7012d6a607)"><code class="xref py py-obj docutils literal notranslate"><span class="pre">DataFrame</span></code></a>) – A tabulation of all terms in the provided formula expression.</p></li>
 </ul>
 </p>
 </dd>
@@ -472,7 +472,7 @@
 <p>Temporal derivatives and exponential terms are computed for all terms
 in the grouping symbols that they adjoin.</p>
 </li>
-<li><p><strong>parent_data</strong> (<a class="reference external" href="https://pandas.pydata.org/pandas-docs/dev/reference/api/pandas.DataFrame.html#pandas.DataFrame" title="(in pandas v2.2.0.dev0+621.gde9815c6c5)"><code class="xref py py-obj docutils literal notranslate"><span class="pre">DataFrame</span></code></a>) – A tabulation of all values usable in the model formula. Each additive
+<li><p><strong>parent_data</strong> (<a class="reference external" href="https://pandas.pydata.org/pandas-docs/dev/reference/api/pandas.DataFrame.html#pandas.DataFrame" title="(in pandas v2.2.0.dev0+750.g7012d6a607)"><code class="xref py py-obj docutils literal notranslate"><span class="pre">DataFrame</span></code></a>) – A tabulation of all values usable in the model formula. Each additive
 term in <cite>model_formula</cite> should correspond either to a variable in this
 data frame or to instructions for operating on a variable (for
 instance, computing temporal derivatives or exponential terms).</p></li>
@@ -482,7 +482,7 @@
 <dd class="field-even"><p><ul class="simple">
 <li><p><strong>variables</strong> (<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#list" title="(in Python v3.12)"><code class="xref py py-obj docutils literal notranslate"><span class="pre">list</span></code></a> of <a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.12)"><code class="xref py py-obj docutils literal notranslate"><span class="pre">str</span></code></a>) – A list of variables included in the model parsed from the provided
 formula.</p></li>
-<li><p><strong>data</strong> (<a class="reference external" href="https://pandas.pydata.org/pandas-docs/dev/reference/api/pandas.DataFrame.html#pandas.DataFrame" title="(in pandas v2.2.0.dev0+621.gde9815c6c5)"><code class="xref py py-obj docutils literal notranslate"><span class="pre">DataFrame</span></code></a>) – All values in the complete model.</p></li>
+<li><p><strong>data</strong> (<a class="reference external" href="https://pandas.pydata.org/pandas-docs/dev/reference/api/pandas.DataFrame.html#pandas.DataFrame" title="(in pandas v2.2.0.dev0+750.g7012d6a607)"><code class="xref py py-obj docutils literal notranslate"><span class="pre">DataFrame</span></code></a>) – All values in the complete model.</p></li>
 </ul>
 </p>
 </dd>
@@ -496,7 +496,7 @@
 <dl class="field-list simple">
 <dt class="field-odd">Parameters<span class="colon">:</span></dt>
 <dd class="field-odd"><ul class="simple">
-<li><p><strong>data</strong> (<a class="reference external" href="https://pandas.pydata.org/pandas-docs/dev/reference/api/pandas.DataFrame.html#pandas.DataFrame" title="(in pandas v2.2.0.dev0+621.gde9815c6c5)"><code class="xref py py-obj docutils literal notranslate"><span class="pre">DataFrame</span></code></a>) – A tabulation of observations from which spike regressors should be
+<li><p><strong>data</strong> (<a class="reference external" href="https://pandas.pydata.org/pandas-docs/dev/reference/api/pandas.DataFrame.html#pandas.DataFrame" title="(in pandas v2.2.0.dev0+750.g7012d6a607)"><code class="xref py py-obj docutils literal notranslate"><span class="pre">DataFrame</span></code></a>) – A tabulation of observations from which spike regressors should be
 estimated.</p></li>
 <li><p><strong>criteria</strong> (<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#dict" title="(in Python v3.12)"><code class="xref py py-obj docutils literal notranslate"><span class="pre">dict</span></code></a> of (<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.12)"><code class="xref py py-obj docutils literal notranslate"><span class="pre">str</span></code></a>, <code class="docutils literal notranslate"><span class="pre">'&gt;'</span></code> or <code class="docutils literal notranslate"><span class="pre">'&lt;'</span></code> or <a class="reference external" href="https://docs.python.org/3/library/functions.html#float" title="(in Python v3.12)"><code class="xref py py-obj docutils literal notranslate"><span class="pre">float</span></code></a>)) – Criteria for generating a spike regressor. If, for a given frame, the
 value of the variable corresponding to the key exceeds the threshold
@@ -523,7 +523,7 @@
 <dd class="field-even"><p><strong>data</strong> – The input DataFrame with a column for each spike regressor.</p>
 </dd>
 <dt class="field-odd">Return type<span class="colon">:</span></dt>
-<dd class="field-odd"><p><a class="reference external" href="https://pandas.pydata.org/pandas-docs/dev/reference/api/pandas.DataFrame.html#pandas.DataFrame" title="(in pandas v2.2.0.dev0+621.gde9815c6c5)"><code class="xref py py-obj docutils literal notranslate"><span class="pre">DataFrame</span></code></a></p>
+<dd class="field-odd"><p><a class="reference external" href="https://pandas.pydata.org/pandas-docs/dev/reference/api/pandas.DataFrame.html#pandas.DataFrame" title="(in pandas v2.2.0.dev0+750.g7012d6a607)"><code class="xref py py-obj docutils literal notranslate"><span class="pre">DataFrame</span></code></a></p>
 </dd>
 </dl>
 <p class="rubric">References</p>
@@ -549,14 +549,14 @@
 To retain the original terms, <code class="docutils literal notranslate"><span class="pre">0</span></code> <em>must</em> be included in the list.</p></li>
 <li><p><strong>variables</strong> (<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#list" title="(in Python v3.12)"><code class="xref py py-obj docutils literal notranslate"><span class="pre">list</span></code></a> of <a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.12)"><code class="xref py py-obj docutils literal notranslate"><span class="pre">str</span></code></a>) – List of variables for which temporal derivative terms should be
 computed.</p></li>
-<li><p><strong>data</strong> (<a class="reference external" href="https://pandas.pydata.org/pandas-docs/dev/reference/api/pandas.DataFrame.html#pandas.DataFrame" title="(in pandas v2.2.0.dev0+621.gde9815c6c5)"><code class="xref py py-obj docutils literal notranslate"><span class="pre">DataFrame</span></code></a>) – Table of values of all observations of all variables.</p></li>
+<li><p><strong>data</strong> (<a class="reference external" href="https://pandas.pydata.org/pandas-docs/dev/reference/api/pandas.DataFrame.html#pandas.DataFrame" title="(in pandas v2.2.0.dev0+750.g7012d6a607)"><code class="xref py py-obj docutils literal notranslate"><span class="pre">DataFrame</span></code></a>) – Table of values of all observations of all variables.</p></li>
 </ul>
 </dd>
 <dt class="field-even">Returns<span class="colon">:</span></dt>
 <dd class="field-even"><p><ul class="simple">
 <li><p><strong>variables_deriv</strong> (<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#list" title="(in Python v3.12)"><code class="xref py py-obj docutils literal notranslate"><span class="pre">list</span></code></a>) – A list of variables to include in the final data frame after adding
 the specified derivative terms.</p></li>
-<li><p><strong>data_deriv</strong> (<a class="reference external" href="https://pandas.pydata.org/pandas-docs/dev/reference/api/pandas.DataFrame.html#pandas.DataFrame" title="(in pandas v2.2.0.dev0+621.gde9815c6c5)"><code class="xref py py-obj docutils literal notranslate"><span class="pre">DataFrame</span></code></a>) – Table of values of all observations of all variables, including any
+<li><p><strong>data_deriv</strong> (<a class="reference external" href="https://pandas.pydata.org/pandas-docs/dev/reference/api/pandas.DataFrame.html#pandas.DataFrame" title="(in pandas v2.2.0.dev0+750.g7012d6a607)"><code class="xref py py-obj docutils literal notranslate"><span class="pre">DataFrame</span></code></a>) – Table of values of all observations of all variables, including any
 specified derivative terms.</p></li>
 </ul>
 </p>

master/api/niworkflows.viz.html

@@ -311,7 +311,7 @@
 <li><p><strong>sort_rows</strong> (<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.12)"><code class="xref py py-obj docutils literal notranslate"><span class="pre">str</span></code></a> or <a class="reference external" href="https://docs.python.org/3/library/constants.html#False" title="(in Python v3.12)"><code class="xref py py-obj docutils literal notranslate"><span class="pre">False</span></code></a> or <a class="reference external" href="https://docs.python.org/3/library/constants.html#None" title="(in Python v3.12)"><code class="xref py py-obj docutils literal notranslate"><span class="pre">None</span></code></a>) – Apply a clustering algorithm to reorganize the rows of the carpet.
 <code class="docutils literal notranslate"><span class="pre">&quot;&quot;</span></code>, <code class="docutils literal notranslate"><span class="pre">False</span></code>, and <code class="docutils literal notranslate"><span class="pre">None</span></code> skip clustering sorting.
 <code class="docutils literal notranslate"><span class="pre">&quot;linkage&quot;</span></code> uses linkage hierarchical clustering
-<a class="reference external" href="https://docs.scipy.org/doc/scipy/reference/generated/scipy.cluster.hierarchy.linkage.html#scipy.cluster.hierarchy.linkage" title="(in SciPy v1.11.3)"><code class="xref py py-obj docutils literal notranslate"><span class="pre">scipy.cluster.hierarchy.linkage</span></code></a>.
+<a class="reference external" href="https://docs.scipy.org/doc/scipy/reference/generated/scipy.cluster.hierarchy.linkage.html#scipy.cluster.hierarchy.linkage" title="(in SciPy v1.11.4)"><code class="xref py py-obj docutils literal notranslate"><span class="pre">scipy.cluster.hierarchy.linkage</span></code></a>.
 Any other value that Python evaluates to <code class="docutils literal notranslate"><span class="pre">True</span></code> will use the
 default clustering, which is <code class="xref py py-obj docutils literal notranslate"><span class="pre">sklearn.cluster.ward_tree</span></code>.</p></li>
 </ul>

master/api/niworkflows.viz.plots.html

@@ -463,7 +463,7 @@
 <li><p><strong>sort_rows</strong> (<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.12)"><code class="xref py py-obj docutils literal notranslate"><span class="pre">str</span></code></a> or <a class="reference external" href="https://docs.python.org/3/library/constants.html#False" title="(in Python v3.12)"><code class="xref py py-obj docutils literal notranslate"><span class="pre">False</span></code></a> or <a class="reference external" href="https://docs.python.org/3/library/constants.html#None" title="(in Python v3.12)"><code class="xref py py-obj docutils literal notranslate"><span class="pre">None</span></code></a>) – Apply a clustering algorithm to reorganize the rows of the carpet.
 <code class="docutils literal notranslate"><span class="pre">&quot;&quot;</span></code>, <code class="docutils literal notranslate"><span class="pre">False</span></code>, and <code class="docutils literal notranslate"><span class="pre">None</span></code> skip clustering sorting.
 <code class="docutils literal notranslate"><span class="pre">&quot;linkage&quot;</span></code> uses linkage hierarchical clustering
-<a class="reference external" href="https://docs.scipy.org/doc/scipy/reference/generated/scipy.cluster.hierarchy.linkage.html#scipy.cluster.hierarchy.linkage" title="(in SciPy v1.11.3)"><code class="xref py py-obj docutils literal notranslate"><span class="pre">scipy.cluster.hierarchy.linkage</span></code></a>.
+<a class="reference external" href="https://docs.scipy.org/doc/scipy/reference/generated/scipy.cluster.hierarchy.linkage.html#scipy.cluster.hierarchy.linkage" title="(in SciPy v1.11.4)"><code class="xref py py-obj docutils literal notranslate"><span class="pre">scipy.cluster.hierarchy.linkage</span></code></a>.
 Any other value that Python evaluates to <code class="docutils literal notranslate"><span class="pre">True</span></code> will use the
 default clustering, which is <code class="xref py py-obj docutils literal notranslate"><span class="pre">sklearn.cluster.ward_tree</span></code>.</p></li>
 </ul>

master/api/niworkflows.workflows.epi.refmap.html

@@ -346,7 +346,7 @@
 for averaging, per run.</p></li>
 <li><p><strong>n_dummy_scans</strong> (<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#list" title="(in Python v3.12)"><code class="xref py py-obj docutils literal notranslate"><span class="pre">list</span></code></a> of <a class="reference external" href="https://docs.python.org/3/library/functions.html#int" title="(in Python v3.12)"><code class="xref py py-obj docutils literal notranslate"><span class="pre">int</span></code></a>) – Number of nonsteady states at the beginning of each run (only BOLD with
 <code class="docutils literal notranslate"><span class="pre">auto_bold_nss=True</span></code>)</p></li>
-<li><p><strong>validate_report</strong> (<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.12)"><code class="xref py py-obj docutils literal notranslate"><span class="pre">str</span></code></a>) – HTML reportlet(s) indicating whether the input files had a valid affine</p></li>
+<li><p><strong>validation_report</strong> (<a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.12)"><code class="xref py py-obj docutils literal notranslate"><span class="pre">str</span></code></a>) – HTML reportlet(s) indicating whether the input files had a valid affine</p></li>
 </ul>
 </dd>
 </dl>