Merge pull request #8 from not-a-feature/dev

small fixes
not-a-feature · Mar 12, 2024 · 4e7b525 · 4e7b525
2 parents ebff61a + 93581cd
commit 4e7b525
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Showing 15 changed files with 8 additions and 71 deletions.
diff --git a/.github/workflows/black.yml b/.github/workflows/black.yml
diff --git a/.github/workflows/python-publish.yml b/.github/workflows/python-publish.yml
diff --git a/.github/workflows/tests.yml b/.github/workflows/tests.yml
@@ -10,7 +10,7 @@ jobs:
     strategy:
       matrix:
         os: [ubuntu-latest, windows-latest]
-        python-version: ['3.8', '3.10', '3.11']
+        python-version: ['3.8', '3.10', '3.12']
 
     steps:
     - uses: actions/checkout@v3

diff --git a/.gitignore b/.gitignore
diff --git a/DEPENDENCIES.md b/DEPENDENCIES.md
diff --git a/LICENSE b/LICENSE
diff --git a/README.md b/README.md
@@ -62,6 +62,8 @@ theta_w = watterson_estimator(sequences)
 
 
 ## Standalone version
+The standalone version requires `miniFasta>=2.2` to be installed.
+
 ```
 usage: tajimas_d [-h] -f PATH [-p] [-t] [-w]
 
@@ -78,8 +80,9 @@ optional arguments:
 ```
 
 ## License
-```
-Copyright (C) 2022 by Jules Kreuer - @not_a_feature
+
+Copyright (C) 2024 by Jules Kreuer - @not_a_feature
+
 This piece of software is published unter the GNU General Public License v3.0
 TLDR:
 
@@ -90,9 +93,5 @@ TLDR:
 | ✓ Modification   | Same license                 |             |
 | ✓ Patent use     | State changes                |             |
 | ✓ Private use    |                              |             |
-```
-Go to [LICENSE.md](https://github.com/not-a-feature/tajimas_d/blob/main/LICENSE) to see the full version.
 
-## Dependencies
-In addition to packages included in Python 3, this piece of software uses 3rd-party software packages for development purposes that are not required in the published version.
-Go to [DEPENDENCIES.md](https://github.com/not-a-feature/tajimas_d/blob/main/DEPENDENCIES.md) to see all dependencies and licenses.
+Go to [LICENSE.md](https://github.com/not-a-feature/tajimas_d/blob/main/LICENSE) to see the full version.
diff --git a/dev.py b/dev.py
diff --git a/pyproject.toml b/pyproject.toml
diff --git a/requirements_dev.txt b/requirements_dev.txt
diff --git a/requirements_standalone.txt b/requirements_standalone.txt
diff --git a/setup.cfg b/setup.cfg
@@ -1,6 +1,6 @@
 [metadata]
 name = tajimas_d
-version = 2.0.0
+version = 2.0.1
 description = Computes Tajimas D, the Pi- or Watterson-Estimator for multiple sequences.
 long_description = file: README.md
 long_description_content_type=text/markdown
@@ -12,9 +12,6 @@ license_file = LICENSE
 platforms = unix, linux, osx, cygwin, win32
 classifiers =
     Programming Language :: Python :: 3
-    Programming Language :: Python :: 3.8
-    Programming Language :: Python :: 3.10
-    Programming Language :: Python :: 3.11
 
 [options]
 packages =

diff --git a/setup.py b/setup.py
diff --git a/tajimas-d.png b/tajimas-d.png
diff --git a/tox.ini b/tox.ini