Revise textual definition & add synonyms: mesosalpinx to include fallopian tube #622
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: Create new pull request | |
| on: | |
| workflow_dispatch: | |
| issues: | |
| types: [ opened, edited ] | |
| jobs: | |
| check: | |
| runs-on: ubuntu-latest | |
| outputs: | |
| phraseExists: ${{ steps.check-body.outputs.result }} | |
| steps: | |
| - name: Check if issue body contains 'Hey ontobot' | |
| id: check-body | |
| uses: actions/github-script@v6 | |
| with: | |
| script: | | |
| const issue = await github.rest.issues.get({ | |
| owner: context.repo.owner, | |
| repo: context.repo.repo, | |
| issue_number: context.issue.number | |
| }); | |
| if (!issue.data.body) { | |
| console.log('Issue body is empty or null'); | |
| return false; | |
| } | |
| return issue.data.body.toLowerCase().includes('hey ontobot'); | |
| build: | |
| needs: check | |
| if: needs.check.outputs.phraseExists == 'true' | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| matrix: | |
| python-version: ["3.9"] | |
| os: [ ubuntu-latest ] | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v3 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Return issue number | |
| id: gh-script-issue | |
| uses: actions/github-script@v6 | |
| with: | |
| github-token: ${{ secrets.ONTOBOT_TOKEN }} | |
| script: | | |
| const issue_number = context.issue.number | |
| const repo = context.repo.owner+"/"+context.repo.repo | |
| return issue_number | |
| - name: Return repository name | |
| id: gh-script-repo | |
| uses: actions/github-script@v6 | |
| with: | |
| github-token: ${{ secrets.ONTOBOT_TOKEN }} | |
| script: | | |
| const repo = context.repo.owner+"/"+context.repo.repo | |
| return repo | |
| - name: Set branch name | |
| id: vars | |
| run: | | |
| echo "branch-name=ochange_automation_"${{ steps.gh-script-issue.outputs.result }} >> $GITHUB_ENV | |
| echo "resource=src/ontology/uberon-edit.obo" >> $GITHUB_ENV | |
| - name: Install dependencies | |
| run: | | |
| pip install ontobot-change-agent | |
| - name: Run ochange | |
| id: ochange | |
| run: | | |
| ochange process-issue ${{ env.resource }} \ | |
| -r ${{ steps.gh-script-repo.outputs.result }} \ | |
| -n ${{ steps.gh-script-issue.outputs.result }} \ | |
| -g ${{ secrets.ONTOBOT_TOKEN }} \ | |
| -p UBERON | |
| - name: Create Pull Request | |
| uses: peter-evans/create-pull-request@v4 | |
| if: ${{ env.PR_TITLE}} | |
| with: | |
| branch-suffix: short-commit-hash | |
| labels: Automated | |
| body: ${{ env.PR_BODY }} | |
| title: ${{ env.PR_TITLE }} | |
| author: ${{ env.ISSUE_CREATOR }} <${{ env.ISSUE_CREATOR }}@users.noreply.github.com> | |
| committer: ${{ env.ISSUE_CREATOR }} <${{ env.ISSUE_CREATOR }}@users.noreply.github.com> | |
| base: ${{ github.head_ref }} | |
| branch: ${{ env.branch-name }} | |
| token: ${{ secrets.ONTOBOT_TOKEN }} |