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nb2galaxy prototype #102

Merged
merged 35 commits into from
Feb 27, 2024
Merged

nb2galaxy prototype #102

merged 35 commits into from
Feb 27, 2024

Commits on Aug 31, 2023

  1. nb2galaxy prototype

    @dsavchenko
    dsavchenko committed Aug 31, 2023
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Commits on Sep 2, 2023

  1. split outputs

    @dsavchenko
    dsavchenko committed Sep 2, 2023
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Commits on Sep 4, 2023

  1. fix regex

    @dsavchenko
    dsavchenko committed Sep 4, 2023
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  2. run with ipython

    @dsavchenko
    dsavchenko committed Sep 4, 2023
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Commits on Sep 7, 2023

  1. fix encoding oda-annotated basic types

    @dsavchenko
    dsavchenko committed Sep 7, 2023
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Commits on Sep 20, 2023

  1. Merge branch 'master' into galaxy

    @dsavchenko
    dsavchenko committed Sep 20, 2023
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Commits on Sep 21, 2023

  1. multiple data products

    @dsavchenko
    dsavchenko committed Sep 21, 2023
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Commits on Sep 22, 2023

  1. either one dataproduct or several

    @dsavchenko
    dsavchenko committed Sep 22, 2023
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Commits on Oct 5, 2023

  1. remove todo comment

    @dsavchenko
    dsavchenko committed Oct 5, 2023
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Commits on Oct 24, 2023

  1. basic requrements parsing

    @dsavchenko
    dsavchenko committed Oct 24, 2023
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Commits on Oct 26, 2023

  1. default tests

    @dsavchenko
    dsavchenko committed Oct 26, 2023
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Commits on Oct 30, 2023

  1. combine rrequirements

    @dsavchenko
    dsavchenko committed Oct 30, 2023
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  2. Merge branch 'master' into galaxy

    @dsavchenko
    dsavchenko authored Oct 30, 2023
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Commits on Oct 31, 2023

  1. no exception for unhandled requirements

    @dsavchenko
    dsavchenko committed Oct 31, 2023
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Commits on Nov 3, 2023

  1. no label duplication

    @dsavchenko
    dsavchenko committed Nov 3, 2023
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  2. citations and help

    @dsavchenko
    dsavchenko committed Nov 3, 2023
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  3. remove unused md + todo

    @dsavchenko
    dsavchenko committed Nov 3, 2023
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  4. fix no dir

    @dsavchenko
    dsavchenko committed Nov 3, 2023
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Commits on Nov 9, 2023

  1. comment about galaxyxml package

    @dsavchenko
    dsavchenko committed Nov 9, 2023
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Commits on Dec 20, 2023

  1. tool id

    @dsavchenko
    dsavchenko committed Dec 20, 2023
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  2. xml filename

    @dsavchenko
    dsavchenko committed Dec 20, 2023
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Commits on Jan 31, 2024

  1. preferably use doi in galaxy xml

    @dsavchenko
    dsavchenko committed Jan 31, 2024
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Commits on Feb 7, 2024

  1. optional ipython

    @dsavchenko
    dsavchenko committed Feb 7, 2024
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Commits on Feb 15, 2024

  1. script styling

    @dsavchenko
    dsavchenko committed Feb 15, 2024
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  2. ignore get_ipython undefined with noqa

    @dsavchenko
    dsavchenko committed Feb 15, 2024
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  3. more styling

    @dsavchenko
    dsavchenko committed Feb 15, 2024
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Commits on Feb 16, 2024

  1. better code injection

    @dsavchenko
    dsavchenko committed Feb 16, 2024
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  2. fix undefined outp_code

    @dsavchenko
    dsavchenko committed Feb 16, 2024
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  3. Merge branch 'master' into galaxy

    @dsavchenko
    dsavchenko committed Feb 16, 2024
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  4. ignore linting for now

    @dsavchenko
    dsavchenko committed Feb 16, 2024
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  5. file input

    @dsavchenko
    dsavchenko committed Feb 16, 2024
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Commits on Feb 19, 2024

  1. Merge branch 'master' into galaxy

    @dsavchenko
    dsavchenko authored Feb 19, 2024
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  2. {data_style: paths} for data parameter

    @dsavchenko
    dsavchenko committed Feb 19, 2024
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  3. data_style in the right place

    @dsavchenko
    dsavchenko committed Feb 19, 2024
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Commits on Feb 26, 2024

  1. Merge branch 'master' into galaxy

    @dsavchenko
    dsavchenko authored Feb 26, 2024
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