v4.0.0 (Bufo bufo)

• Replaced seqtk subseq with samtools faidx for performance on large genomes.
• Compress genomes with bgzip and index them.
• Added an --assemblyscan_memory parameter to run assembly-scan with more memory

Tested on fungi and amphibians, still chokes on axolotl genome.

v3.0.0 (Chaenocephalus aceratus)

New release that reduces memory usage and reports assembly statistics. Major because it changes file names and output directories (breaking change).

Tested on Eupercaria.

v2.0.0 (Lama glama)

Support for TSV input (with breaking changes), and cleaner collecting of mitogenomes.

Tested on Artiodactyls.

v1.1.0 (Mus caroli)

Expanded the pattern matching chromosome contigs to ^(CM|CP|FR|L[R-T]|O[U-Z]).

Tested on Glires

v1.0.0 (Orang Outan)

Tested on primate genomes.