Add this suggestion to a batch that can be applied as a single commit.
This suggestion is invalid because no changes were made to the code.
Suggestions cannot be applied while the pull request is closed.
Suggestions cannot be applied while viewing a subset of changes.
Only one suggestion per line can be applied in a batch.
Add this suggestion to a batch that can be applied as a single commit.
Applying suggestions on deleted lines is not supported.
You must change the existing code in this line in order to create a valid suggestion.
Outdated suggestions cannot be applied.
This suggestion has been applied or marked resolved.
Suggestions cannot be applied from pending reviews.
Suggestions cannot be applied on multi-line comments.
Suggestions cannot be applied while the pull request is queued to merge.
Suggestion cannot be applied right now. Please check back later.
Add link https://uk1s3.embassy.ebi.ac.uk/bia-integrator-data/pages/idr_ngff_data.html to data page.
NB data size is approx estimate from totals listed on studies.txt page before conversion to NGFF.
NB: I wonder if we want to add a note somewhere that opening Plates in vizarr often doesn't work because of the trailing
/0
as it's expectingbioformats2raw
format.E.g https://uk1s3.embassy.ebi.ac.uk/bia-integrator-data/pages/S-BIAD847/02fb729e-803a-4c2e-b40c-cf58d839567c.html shows nothing, and when you open in vizarr you get:
https://hms-dbmi.github.io/vizarr/?source=https://uk1s3.embassy.ebi.ac.uk/bia-integrator-data/S-BIAD847/02fb729e-803a-4c2e-b40c-cf58d839567c/02fb729e-803a-4c2e-b40c-cf58d839567c.zarr/0 which looks broken.
You need to remove the trailing
/0
before it's viewable: